CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12322 contig Csv1_Contig12322:302..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_THETN (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter tengcongensis GN=leuC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.222e-27
Identity = 74/202 (36.63%), Postives = 106/202 (52.48%), Query Frame = -2
Query:  273 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 872
            D  T  Y++ +    Y+    DE A +      ++  + P VA PH P+N     E   VKID+V IGSCT G+  D   A ++    GKKV   V   + PATQ+++++           +   + F +AG    ++P+CG CLGG     A+       ++TTNRNF GRMGH E ++YLASP  AAASA+ GY+  P E
Sbjct:  229 DEITEAYVKKRAKREYKVFERDEDAEYSEVIEINLDDIRPQVAFPHLPENTRSIDEVGKVKIDQVVIGSCTNGRLSDMEIAYRIL--KGKKVHPDVRLIIFPATQEIYLECVK--------RGYIEEFIKAGA-AVSTPTCGPCLGGHMGVLAKGER---ALATTNRNFVGRMGHPESEVYLASPAVAAASAIAGYIVSPEE 416          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_THEP3 (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=leuC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.222e-27
Identity = 74/202 (36.63%), Postives = 106/202 (52.48%), Query Frame = -2
Query:  273 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 872
            D  T  Y++ +    Y+    D  A +   Y   + ++ P VA PH P+N     E   VKID+V IGSCT G+  D   A K+    GKKV   V   + PATQ+++++           +   + F +AG    ++P+CG CLGG     A+       ++TTNRNF GRMGH E ++YL+SP  AAASA+ GY+  P E
Sbjct:  229 DEITEAYVKGRAKREYKVFERDVDAEYSEVYEISLDEIRPQVAFPHLPENTRNIDEVGKVKIDQVVIGSCTNGRISDMEIAYKIL--KGKKVHPDVRLLIFPATQEIYLECVK--------RGYIEEFIKAGA-AVSTPTCGPCLGGHMGILAKGER---ALATTNRNFVGRMGHPESEVYLSSPAVAAASAIAGYIVSPEE 416          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC1_THEMA (3-isopropylmalate dehydratase large subunit 1 OS=Thermotoga maritima GN=leuC1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.222e-27
Identity = 77/208 (37.02%), Postives = 113/208 (54.33%), Query Frame = -2
Query:  267 VPADGTTFKYLEDK-TSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN--RALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 881
            +P+D  T ++L+       +  + +D  A + +E   D + LEPLV+ PH  DN  +    E + +KID+V+IG+CT G+ +D   A K+    GK   V   + PA++KV+MD           K   + F E G      P CG C+G        + +    +ST NRNF GRMG+   +IYLASP TAAA+A+TGY+TDPR F+
Sbjct:  223 MPSDEKTREFLKKMGREEDFRELKADPDAVYETEIEIDATTLEPLVSLPHYVDNVRKVSEVEKEKIKIDQVFIGTCTNGRLQDLEIALKILEKHGKHPDVRLIVGPASRKVYMDALE--------KGIIKKFVELGAAV-IPPGCGPCVGIHMGV---LGDGERVLSTQNRNFKGRMGNPNAEIYLASPATAAATAVTGYITDPRRFI 418          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_SULNB (3-isopropylmalate dehydratase large subunit OS=Sulfurovum sp. (strain NBC37-1) GN=leuC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.376e-27
Identity = 82/213 (38.50%), Postives = 112/213 (52.58%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTS----LPYEPV--YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            +  D  T  YL ++      L  EP   YSDE A++      D+  L P++A P  P N     +    D+KID+V IGSCT G+ ED   AA++    GK+V   T ++  PATQK+ M            +    I  EAG    ++P+CGACLGG       + +   CV+TTNRNF GRMG +  +IYLA+   AAASA+ G + DPRE
Sbjct:  227 IAVDNITEAYLIERAEANGGLRSEPKIHYSDEDATYCQVVTIDVENLSPVIAYPFLPSNGKPVEQAVKDDLKIDQVMIGSCTNGRIEDLRIAAEIM--KGKRVAKHTRMIVTPATQKILMQAQH--------EGLMDILIEAGA-VVSNPTCGACLGGYMGI---LGDGERCVATTNRNFVGRMGARTSEIYLANSAVAAASAIAGKIVDPRE 425          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_GEOUR (3-isopropylmalate dehydratase large subunit OS=Geobacter uraniireducens (strain Rf4) GN=leuC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.376e-27
Identity = 87/215 (40.47%), Postives = 113/215 (52.56%), Query Frame = -2
Query:  267 DGTTFKYL-----EDKTS-----LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAG-CDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 872
            D  T  YL     ED  S     + ++  +SDE A +      DIS LEP+V   + PD      E     +D+VY+GSCT G+ ED   AA++    GKK+   V   L PAT KV+ D           +    IF EAG C T  +P+CGACLG      A   E  VC STTNRNF GRMG K G ++L SP T+AA+A+ G + DPR++L
Sbjct:  229 DSVTVDYLWPFISEDYASKEAALVEFKKWWSDEDAVYERVLDLDISGLEPVVTFGYKPDQVKTITEMAGTPVDQVYLGSCTNGRLEDLRVAAEIL--KGKKIAPTVRAILSPATPKVYSDAL--------HEGLIDIFMEAGFCVT--NPTCGACLGMSNGVLA---EGEVCASTTNRNFMGRMG-KGGMVHLMSPATSAATAIEGKMADPRKYL 427          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CAMC1 (3-isopropylmalate dehydratase large subunit OS=Campylobacter concisus (strain 13826) GN=leuC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.376e-27
Identity = 80/209 (38.28%), Postives = 113/209 (54.07%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLPYEP--VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            +  D  T ++L+DK +L  +P   YSDE A +      D++ L+P++A P  P N    R+    D+ ID+ +IGSCT G+  D   AA++    GKKV   T L+  PATQK+           +  +    IF EAG    ++P+CGACLGG             C+STTNRNF GRMG +  +IYLA+    AASA+ G + DPR+
Sbjct:  227 IAVDEITKEFLKDK-NLRDKPKFFYSDEGAKYDKILEIDVTNLDPVIAYPFLPSNGKSVRQAVRDDLAIDQAFIGSCTNGRLSDLRIAAQIL--KGKKVARKTRLIITPATQKI--------ARAAEKEGLIDIFIEAGA-VVSNPTCGACLGGYMGILGANER---CISTTNRNFVGRMGDRTSEIYLANSAVVAASAIAGKIADPRD 420          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_GEOMG (3-isopropylmalate dehydratase large subunit OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=leuC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.225e-26
Identity = 78/185 (42.16%), Postives = 103/185 (55.68%), Query Frame = -2
Query:  267 SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAG-CDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 812
            SD+ A +     FD+S LEP+V   + PD      E     +D+VY+GSCT G+ ED   AA++    GKK+   V   L PAT K++ D           +    IF EAG C T  +P+CGACLG      A   E  VC STTNRNF GRMG K G ++L SP T+AA+A+ G + DPR++L
Sbjct:  259 SDDDAVYERVLDFDVSVLEPIVTFGYKPDQVKPISEIAGSPVDQVYLGSCTNGRLEDLRIAARIL--KGKKIAPSVRGILSPATPKIYKDAM--------AEGLIDIFMEAGFCVT--NPTCGACLGMSNGVLA---EGEVCASTTNRNFMGRMG-KGGMVHLMSPATSAATAIEGVIADPRKYL 427          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC1_ARCFU (3-isopropylmalate dehydratase large subunit 1 OS=Archaeoglobus fulgidus GN=leuC1 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.225e-26
Identity = 77/205 (37.56%), Postives = 110/205 (53.66%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLPYEP--VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            V  D TT +YL+     PYE   + SDE A F  E   D++ +EP VA PH  DN     E +  ++D+V+IGSCT G+ ED   AA++         V   ++PA+ + +             +   +IF +AG    A P CG C+GG   ++  +    V VST+NRNF GR G  EG+IYL +P  AAA+A+ G +TDPR+
Sbjct:  226 VEPDKTTLEYLK-AMGRPYEGELLKSDEDAEF-QEVELDVTGMEPQVAAPHRVDNVVGISEVEGTRVDQVFIGSCTNGRYEDLKIAAEILKGEKVASNVRLIVIPASHREYRRALK--------EGLIEIFVDAGALVEA-PCCGPCMGG---SFGLIASGEVSVSTSNRNFIGRQGSPEGKIYLVNPAVAAATAIYGEITDPRK 416          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: HACA_METJA (Homoaconitase large subunit OS=Methanocaldococcus jannaschii GN=hacA PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.225e-26
Identity = 74/209 (35.41%), Postives = 108/209 (51.67%), Query Frame = -2
Query:  282 VPADGTTFKYLEDKTSLPYEPV---------YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTD 881
            + AD  T+ YL+ +  L  E +          + ++A++  E   DI+ +E  VA PH PDN     + +  +I++V+IGSCT G+  D   AAK          V   ++PA++KV++            +    IF +AG     +P CG CLG  +   A   E  +C+STTNRNF GRMGH    IYLASP  AA SA+ GY+T+
Sbjct:  221 IEADEITYDYLKKERGLSDEDIAKLKKERITVNRDEANYYKEIEIDITDMEEQVAVPHHPDNVKPISDVEGTEINQVFIGSCTNGRLSDLREAAKYLKGREVHKDVKLIVIPASKKVFLQALK--------EGIIDIFVKAGA-MICTPGCGPCLGAHQGVLA---EGEICLSTTNRNFKGRMGHINSYIYLASPKIAAISAVKGYITN 417          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_SULDN (3-isopropylmalate dehydratase large subunit OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=leuC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.089e-26
Identity = 77/206 (37.38%), Postives = 111/206 (53.88%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLPYEPV--YSDEKASFLSEYRFDISKLEPLVAKPHSPDN-RALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            V  D TT  +L DK +L  EP   YSD  AS++     D++ L+P++A P  P N  ++ +  KD +KID+ +IGSCT G+  D   AA++         V   + P TQ +  +   L            I  +AG    ++P+CGACLGG       + +  V +STTNRNF GRMG +  ++YLA+   AA SA+ GY+TDPR
Sbjct:  227 VAYDETTKAFLADK-NLAREPRIHYSDADASYVQILNIDVASLDPVIAYPFLPSNGHSVVQAQKDNIKIDQAFIGSCTNGRLSDLKVAAEILKGKRVHPDVRLIVTPGTQMILREANKLGY--------IDIIVDAG-GVVSNPTCGACLGGYMGI---LGDNEVAISTTNRNFVGRMGSRSSKVYLANSAVAAISAIKGYITDPR 419          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_THETN3.222e-2736.633-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_THEP33.222e-2736.633-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC1_THEMA3.222e-2737.023-isopropylmalate dehydratase large subunit 1 OS=T... [more]
LEUC_SULNB9.376e-2738.503-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_GEOUR9.376e-2740.473-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC_CAMC19.376e-2738.283-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC_GEOMG1.225e-2642.163-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC1_ARCFU1.225e-2637.563-isopropylmalate dehydratase large subunit 1 OS=A... [more]
HACA_METJA1.225e-2635.41Homoaconitase large subunit OS=Methanocaldococcus ... [more]
LEUC_SULDN2.089e-2637.383-isopropylmalate dehydratase large subunit OS=Sul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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