CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC2_PYRAB (3-isopropylmalate dehydratase large subunit 2 OS=Pyrococcus abyssi GN=leuC2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.289e-23
Identity = 70/176 (39.77%), Postives = 95/176 (53.98%), Query Frame = -2
Query:  279 EKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 806
            E   +  E   ++  L P+VAKP SP N     + +  KID+V+IGSCT G+ E    AA++    G++V V T + PA+  V+  +          +   +I  +AG      P CG CLG      A  NE  V +STTNRNF GRMG  + +IYLASP TAA SAL G +T+P
Sbjct:  215 EGGGYSDEITIELDSLPPMVAKPFSPANGVSVEDVEGTKIDQVFIGSCTNGRFEQIKRAAEIL--DGEQVNVRTLVAPASINVYRRMIE--------EGLVRILIDAGV-VILPPGCGPCLGRHMGV-AGDNE--VILSTTNRNFRGRMGSPKAEIYLASPVTAAVSALYGEITNP 376          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_MYCS2 (3-isopropylmalate dehydratase large subunit OS=Mycobacterium smegmatis GN=leuC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.214e-23
Identity = 72/217 (33.18%), Postives = 109/217 (50.23%), Query Frame = -2
Query:  273 VPADGTTFKY-------LEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALA-RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLG------GPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            + AD +TF Y        +D     YEP ++D  A++ +    D+S L P VA+P +     ++  E +  KID+ +IGSC  G+ +D   AA++         V   + PA+Q+V+ D   L           Q   +AG     S +CGAC G      GP +         VC++++ RNF GRMG  E +IY+ASP T AASA+ G++TD R+
Sbjct:  214 ISADFSTFAYDDVLAEHFDDLGITSYEPAHADPDAAYAAVREIDLSALAPYVARPGTVSRNGVSVDEVEPRKIDQAFIGSCANGQLDDLRIAAEILRGRRVAPGVRLIVTPASQQVYRDAMRLGY--------LQDIADAGAVITNS-TCGACFGYHMGVVGPGE---------VCLTSSTRNFTGRMGSTEAEIYMASPATVAASAVAGHITDARK 412          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_DESOH (3-isopropylmalate dehydratase large subunit OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=leuC PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.549e-21
Identity = 76/187 (40.64%), Postives = 96/187 (51.34%), Query Frame = -2
Query:  276 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAG-CDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 827
            ++ + SD  A +      DIS L P V   + PD      E +   ID+VYIGSCT G+ ED   AAKV    GKKV   V   + PAT  V+             +     F  AG C T  +P+CGACLG      A      VC+STTNRNF GRMG K G ++LASP TAAA A+ G +T+ +
Sbjct:  254 FKKLVSDPDADYDRVLEMDISDLSPRVTYGYKPDCVKPVAEMEGTPIDQVYIGSCTNGRLEDLRVAAKVL--KGKKVHPSVRGIVSPATPTVFQAALE--------EGLIATFMAAGFCVT--NPTCGACLGMSNGVLA---PGEVCLSTTNRNFNGRMG-KGGMVHLASPATAAAGAIAGCITNSK 424          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC2_METTH (3-isopropylmalate dehydratase large subunit 2 OS=Methanobacterium thermoautotrophicum GN=leuC2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.642e-21
Identity = 63/197 (31.98%), Postives = 95/197 (48.22%), Query Frame = -2
Query:  273 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 863
            T  Y+  +T   +    SDE + +L ++ FD+S LEP VA P   DN       +   ID  ++GSCT G+ ED   AA+V         V   + PA++++++      +         + F  AG     +P CG CLG      A      V ++TTNRNF GRMG     +YLA+P   A SA+ G ++ P++
Sbjct:  238 TLDYVRARTGREFRVYSSDEDSQYLEDHHFDVSDLEPQVACPDDVDNVYPVHRVEGTHIDEAFLGSCTNGRYEDLKIAAEVIGDRRVHEDVRFIVSPASREIYLKALEDGI--------IETFIRAGA-IVCNPGCGPCLGAHMGVLA---PGEVSIATTNRNFRGRMGDPASSVYLANPAVVAESAIEGVISAPQQ 422          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_OCHA4 (3-isopropylmalate dehydratase large subunit OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=leuC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.507e-21
Identity = 84/253 (33.20%), Postives = 115/253 (45.45%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D TTF Y++DK   P           ++ ++SDE A F      D +K+ P+V+   SP++                        RAL         +  D+KIDRV+IGSCT G+ ED   AA+  +A+GKKV                V  + VPGSG        +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  236 IAPDETTFAYVQDKPRAPKGEALEQAISYWKTLHSDEGAHFDKIVELDAAKISPVVSWGSSPEDVVFVTDIVPNPDEIKDETKRASKWRALDYMGLKPGTKMTDIKIDRVFIGSCTNGRIEDLRDAAR--MAAGKKVAA-------------GVNAMIVPGSGLVKEQAEAEGLDKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 468          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_ANADE (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=leuC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 80/248 (32.26%), Postives = 112/248 (45.16%), Query Frame = -2
Query:  264 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP---------------DNRALARECKDV----------------KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 881
            V  D TTF++L  +   P           +  + SDE A++  E R D S LEP++    +P               +  A AR   +                 K+D V+IGSCT G+ ED   AA+V    G+KV+  T +VP + +V  D        +  +   ++  EAG +    P C  C+    D    +     CVST+NRNF GR G   G+  LASP TAAA+A+TG V DPR  LE
Sbjct:  246 VAPDDTTFQWLAGRPRAPKGAAWDEAVARWRALPSDEGATYDRELRLDASALEPMITFGTNPGQGIAVTGLVPDPAAERDASARTTLEAALRYMGLVPGKPIAGQKVDVVFIGSCTNGRIEDMREAARVL--KGRKVRTRTLVVPGSHRVKKD--------AEAEGIDRVVREAGAEW-REPGCSMCIAMNGDD---IRAGQYCVSTSNRNFEGRQG-PGGRTLLASPLTAAAAAVTGAVADPRRVLE 478          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_ANASK (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter sp. (strain K) GN=leuC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 80/248 (32.26%), Postives = 112/248 (45.16%), Query Frame = -2
Query:  264 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP---------------DNRALARECKDV----------------KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 881
            V  D TTF++L  +   P           +  + SDE A++  E R D + LEP++    +P               +  A AR   +                 K+D V+IGSCT G+ ED   AA+V    G+KV+  T +VP + +V  D        +  +   +I  EAG +    P C  C+    D    +     CVST+NRNF GR G   G+  LASP TAAA+A+TG V DPR  LE
Sbjct:  246 VAPDDTTFEWLAGRPRAPKGAAWDEAVARWRALPSDEGATYDRELRLDAAALEPMITFGTNPGQGIAVTGLVPDPVAERDASARATLEAALRYMGLVPGKPIAGQKVDVVFIGSCTNGRIEDMREAARVL--KGRKVRTRTLVVPGSHRVKKD--------AEAEGIDRIVREAGAEW-REPGCSMCIAMNGDN---IQAGQYCVSTSNRNFEGRQG-PGGRTLLASPLTAAAAAVTGAVADPRRVLE 478          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_ANAD2 (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=leuC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.921e-20
Identity = 79/248 (31.85%), Postives = 112/248 (45.16%), Query Frame = -2
Query:  264 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP---------------DNRALARECKDV----------------KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 881
            V  D TTF++L  +   P           +  + SD+ A++  E R D + LEP++    +P               +  A AR   +                 K+D V+IGSCT G+ ED   AA+V    G+KV+  T +VP + +V  D        +  +   +I  EAG +    P C  C+    D    +     CVST+NRNF GR G   G+  LASP TAAA+A+TG V DPR  LE
Sbjct:  246 VAPDDTTFEWLAGRPRAPKGAAWDEAVARWRALPSDDGATYDRELRLDAAALEPMITFGTNPGQGIAVTGLVPDPVAERDASARATLEAALRYMGLVPGKPIAGQKVDVVFIGSCTNGRIEDMREAARVL--KGRKVRTRTLVVPGSHRVKKD--------AEAEGIDRIVREAGAEW-REPGCSMCIAMNGDN---LQAGQYCVSTSNRNFEGRQG-PGGRTLLASPLTAAAAAVTGAVADPRRVLE 478          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC2_METKA (3-isopropylmalate dehydratase large subunit 2 OS=Methanopyrus kandleri GN=leuC2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.508e-20
Identity = 62/170 (36.47%), Postives = 89/170 (52.35%), Query Frame = -2
Query:  267 DISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLA-SGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 773
            D S++EP+V+ PH  D+     + + V++ RV++GSCT G+  D     ++     G    V   +VPA+++V      L      G T   I         A P CG CLG   +    + +  VCVST NRNFPGRMG +  +IYLASP TAA +A  G + DP++ L
Sbjct:  244 DASEVEPVVSVPHRVDDVRPVGDVQGVEVTRVFVGSCTNGRYRDVRVFTEILEELDGPHPDVRIVVVPASRRV------LERMTEAGLTLKLIRMGVMI---APPGCGPCLG---EHLGVLGDDDVCVSTANRNFPGRMGSRRAEIYLASPVTAAVAAAEGELVDPQDVL 401          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC2_BRAJA (3-isopropylmalate dehydratase large subunit 2 OS=Bradyrhizobium japonicum GN=leuC2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.500e-20
Identity = 82/253 (32.41%), Postives = 111/253 (43.87%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP-----------DNRALARECK--------------------DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            V  D   + +L D+   P           +E + SD+ A F  E R D +KL P+V    SP           D   +A E K                    D+K+DRV+IGSCT G+ ED  AAAK+  A GK+V                V  + VPGSG        +   +IF +AG +    P C  CL    D   ++     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  235 VAPDQKAYDFLRDRPKAPKGAAWDAAMRYWEKLRSDDGAHFDHELRLDAAKLPPIVTWGTSPEDVISVTGIVPDPDKIADEAKRLSKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAAAKI--AEGKQVSA-------------SVNAMVVPGSGIVKEQAEAEGLDKIFIKAGFEW-REPGCSMCLAMNPD---KLKPEERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDVREW 467          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC2_PYRAB6.289e-2339.773-isopropylmalate dehydratase large subunit 2 OS=P... [more]
LEUC_MYCS28.214e-2333.183-isopropylmalate dehydratase large subunit OS=Myc... [more]
LEUC_DESOH1.549e-2140.643-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC2_METTH2.642e-2131.983-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC_OCHA44.507e-2133.203-isopropylmalate dehydratase large subunit OS=Och... [more]
LEUC_ANADE1.311e-2032.263-isopropylmalate dehydratase large subunit OS=Ana... [more]
LEUC_ANASK1.713e-2032.263-isopropylmalate dehydratase large subunit OS=Ana... [more]
LEUC_ANAD22.921e-2031.853-isopropylmalate dehydratase large subunit OS=Ana... [more]
LEUC2_METKA6.508e-2036.473-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC2_BRAJA8.500e-2032.413-isopropylmalate dehydratase large subunit 2 OS=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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