CB290761

Overview
NameCB290761
Unique NameCB290761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 4.863e-55
Identity = 118/158 (74.68%), Postives = 122/158 (77.22%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPT-TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKAARKS PT  GG+K+P RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+K                               TDLRFQSHAVLALQE AEAYLVG+FEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYK-------------------------------TDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTIMPKDIQ 127          
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3L5_ARATH (Putative histone H3-like 5 OS=Arabidopsis thaliana GN=At5g65350 PE=5 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.415e-54
Identity = 116/157 (73.89%), Postives = 121/157 (77.07%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTAR STGGKAPRKQLA KAAR+SAP TGGVKKPHR+RPGTVALR+IRKYQKSTE+LIRKLPFQRLVREIAQDFK                               TDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK+IQ
Sbjct:    1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTEILIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKEIQ 126          
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_USTMA (Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 1.848e-54
Identity = 116/156 (74.36%), Postives = 120/156 (76.92%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 511
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+ GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV+ALQE+AEAYLV LFEDTNL AIHAKRVTI PKDI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVMALQESAEAYLVSLFEDTNLAAIHAKRVTIQPKDI 125          
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.152e-54
Identity = 115/157 (73.25%), Postives = 121/157 (77.07%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQ 126          
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 4.116e-54
Identity = 116/156 (74.36%), Postives = 119/156 (76.28%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 511
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA+EAYLV LFEDTNL AIHAKRVTI PKDI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDI 125          
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 5.376e-54
Identity = 114/157 (72.61%), Postives = 119/157 (75.80%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+Q
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQ 126          
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 7.021e-54
Identity = 114/157 (72.61%), Postives = 121/157 (77.07%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KD+Q
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQ 126          
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H31_USTMA (Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.564e-53
Identity = 115/156 (73.72%), Postives = 118/156 (75.64%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 511
            MARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS A+ ALQEAAEAYLV LFEDTNL AIHAKRVTI PKDI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAIGALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDI 125          
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 2.668e-53
Identity = 115/157 (73.25%), Postives = 118/157 (75.16%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLATKA    A  TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK                               TDLRFQS AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------TDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQ 126          
BLAST of CB290761 vs. ExPASy Swiss-Prot
Match: H3_PHANO (Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.485e-53
Identity = 113/157 (71.97%), Postives = 120/157 (76.43%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKVPYYRFDCYL*IEFPRFLDRRLIAILLSVLQTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 514
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK                               +DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-------------------------------SDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQ 126          
The following BLAST results are available for this feature:
BLAST of CB290761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
H33B_LILLO4.863e-5574.68Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2... [more]
H3L5_ARATH1.415e-5473.89Putative histone H3-like 5 OS=Arabidopsis thaliana... [more]
H32_USTMA1.848e-5474.36Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3[more]
H31_LODEL3.152e-5473.25Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H3_MORAP4.116e-5474.36Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H31_SCHPO5.376e-5472.61Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H31_CANAL7.021e-5472.61Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H31_USTMA1.564e-5373.72Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3[more]
H32_CICIN2.668e-5373.25Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H3_PHANO3.485e-5371.97Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290761 ID=CB290761; Name=CB290761; organism=Citrus sinensis; type=EST; length=649bp
GCACTAGGGAGAAATTGAGTGGAAGAGTTGAAGAAACTCAGAGATGGCCC
GTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGGAAG
CAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGTGT
TAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAATTC
GCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCCAG
AGACTTGTTCGTGAAATTGCTCAGGACTTTAAGGTACCTTATTATCGTTT
TGATTGTTATCTTTAAATTGAGTTCCCAAGATTTCTTGATAGACGGTTAA
TAGCTATTTTGTTGTCTGTTTTGCAGACTGATCTGCGTTTCCAGAGCCAT
GCAGTACTGGCCCTGCAGGAGGCAGCGGAGGCTTACCTTGTTGGTCTCTT
CGAGGACACTAACCTCTGCGCCATTCATGCAAAGCGTGTCACTATTATGC
CCAAGGACATACAGCTTGCCCGTAGGATCCGTGGCGAGCGTGCTTAAGCG
TAATTGCTGCTTGCTTCAATTGAATGACTGGAAGGGAAGGGGGAAGTTGT
AATGTGTTAATTTGTACGTGGGGGTTGGTGGGGGTAGATAGGGGTAGGA
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