CB290762

Overview
NameCB290762
Unique NameCB290762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290762 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.745e-31
Identity = 63/131 (48.09%), Postives = 92/131 (70.23%), Query Frame = -3
Query:  377 VGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 769
            +GFNV+ V+ KD++RG VA +  D+P     +FT+Q++++ HP  I  GY PV+  HT+ IA +F EL  KID R+G+  E+ P+FLK GDA +VK+ PT+PMV+E   D PP+GRFA+RDM  T+  G++
Sbjct:  287 IGFNVRGVSKKDIRRGDVAGHP-DNPPTVVKDFTAQLVVLQHPTAITVGYTPVVHAHTAQIACRFVELQKKIDPRTGQVKEENPQFLKTGDAAIVKLEPTRPMVIERVKDIPPMGRFAIRDMGMTIGAGMV 416          
BLAST of CB290762 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.279e-31
Identity = 63/140 (45.00%), Postives = 96/140 (68.57%), Query Frame = -3
Query:  356 VGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 769
            +GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++ S++K +
Sbjct:  289 IGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CB290762 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.076e-31
Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = -3
Query:  356 VGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 769
            +GFNV+ V  KD+KRG V  ++ + P   A +FT+Q++++ HP  + +GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  291 IGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTDGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CB290762 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.076e-31
Identity = 61/135 (45.19%), Postives = 95/135 (70.37%), Query Frame = -3
Query:  365 VGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 769
            +GFNV+ ++ KD++RG VA +  D P   A  FT+++ ++ HP  I  GY PV+  HT+ IA + +E+  K+D R+G+ +EK P+FLK GDA +VK  P KPMV+E +S++P LGRFA+RDM +T+ +G++  V+
Sbjct:  297 IGFNVRGISKKDIRRGDVAGHV-DKPPTVAEEFTARIFVIWHPSAITVGYTPVIHAHTASIAARITEIQAKLDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDVK 430          
BLAST of CB290762 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.659e-31
Identity = 63/135 (46.67%), Postives = 96/135 (71.11%), Query Frame = -3
Query:  365 VGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 769
            +GFNV+ V+ +D++RG VA +  D+P   A  FT++V I+ HP  I  GY PV+  HT+ +A +  E+  K+D R+GK +E+ P+F+K GDA +V+  P KP+VVE +SD+PPLGRFA+RDM +T+ +GV+  V+
Sbjct:  296 IGFNVRGVSKRDIRRGDVAGHL-DNPPTVAEEFTARVFIIWHPTAITVGYTPVIHIHTASVASRIVEIKAKLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429          
BLAST of CB290762 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.659e-31
Identity = 63/130 (48.46%), Postives = 90/130 (69.23%), Query Frame = -3
Query:  380 VGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 769
            +GFNV+ V   D++RG VA +  D+P + A  FT+Q++++ HPG I  GY PV  CHT+ +A  F ELV K++  +G+  E+ P FLK G+A +VK+ PTKP+V+E   D P +GRFA+RDM QTVA G+
Sbjct:  277 IGFNVRGVGKNDIRRGDVAGHL-DNPPKVAKEFTAQIVVLQHPGVITVGYTPVFHCHTAQVACTFLELVQKMNPATGQVEEENPDFLKTGNAAVVKVKPTKPLVIEKIKDIPHMGRFAIRDMGQTVAAGM 405          
BLAST of CB290762 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.131e-30
Identity = 66/137 (48.18%), Postives = 90/137 (65.69%), Query Frame = -3
Query:  359 VGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 769
            VGFNV+ +A  D++RG V    ++ P   A  FT+QV+++ HP  +  GY PV  CHTS  A  F+EL  K+D RSG+  E+ P FLK GDA +  + PT+P+V+ET  + P LGRFAVRDM  TVA G++ SV+ K
Sbjct:  287 VGFNVRGIAKNDVRRGDVCGPIENPPT-VAEEFTAQVVVLQHPSVLSVGYTPVFHCHTSQTACMFTELNKKLDPRSGQVKEENPAFLKAGDAAICTITPTRPLVIETAKELPQLGRFAVRDMGMTVAAGLVLSVKAK 422          
BLAST of CB290762 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.477e-30
Identity = 64/138 (46.38%), Postives = 93/138 (67.39%), Query Frame = -3
Query:  356 VGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 769
            +GFNV+ V  KD+KRG V  ++ + P   A +FT+Q++++ HP  +  GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  291 IGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CB290762 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.519e-30
Identity = 63/137 (45.99%), Postives = 90/137 (65.69%), Query Frame = -3
Query:  359 VGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 769
            +GFNV+ +A  D+KRG V  +  D P      FT+Q+I++NHP  I  GY PV   HT+ +A +  E+V  ++ + G  L+++P F+KNGD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G    +EK+
Sbjct:  289 IGFNVRGIAKNDIKRGDVCGHL-DTPPTVVKAFTAQIIVLNHPSVIAPGYKPVFHVHTAQVACRIDEIVKTLNPKDGTTLKEKPDFIKNGDVAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CB290762 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.519e-30
Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = -3
Query:  380 VGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 769
            +GFNV+ V   D++RG VA +  D PA  A  F +Q++++ HPG I  GY PV  CHTS +A  F EL  K+D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+
Sbjct:  277 IGFNVRGVGKNDIRRGDVAGHVDDAPA-VAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGL 405          
The following BLAST results are available for this feature:
BLAST of CB290762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_ARCFU1.745e-3148.09Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_THEGJ2.279e-3145.00Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_METVA5.076e-3146.38Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_HYPBU5.076e-3145.19Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_STAMF8.659e-3146.67Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_METTH8.659e-3148.46Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_METLZ1.131e-3048.18Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_METVS1.477e-3046.38Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_THEAC2.519e-3045.99Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_METS32.519e-3049.23Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290762 ID=CB290762; Name=CB290762; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTAATAAAGAGCTTAAAATGAGCTTCCAAATCTTTTAAAAC
CACCAACTTTGACATCCAGCAGCTGGTCTACCATTTTCACAACTCAATTT
AGTGCTATTAACCAAATTCAGAATATAAAAATCCGAACACCCACCACAGC
CAGTTAAGCAGAAAGATAACATCCCAATTGCTCAACAGCAAACTGGGGGA
AGCAAATAGGGCTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAA
GAAAATAAAAAAAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCA
TAAAAATTTCTCATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCT
GTGGGATCCTTCTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTG
ACGCATGTCCCTAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGG
TTTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCT
CCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCT
ATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGT
GGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTTC
ATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCCGGATCATC
CTTCGAGTTGGAAGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGT
TCTTCACGTTGAAACCAACAT
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