CB290763

Overview
NameCB290763
Unique NameCB290763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.457e-56
Identity = 108/223 (48.43%), Postives = 148/223 (66.37%), Query Frame = 3
Query:   72 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEP 740
            +K H N+ +IGHVD GKST  G L+++ G + + VIE+  +EA E  K  F++A+V+D L  ERERG+TIDIA  +F+T  YY T++D PGHRDF+KNMITG SQAD AVL++ +  G          QTREH  LA TLG+ ++I   NKMD     YS+  Y+++  EV   LK+V +N     ++PIS FEGDN+ E S N  W+ GP+LL+AL+N+ EP
Sbjct:    3 DKPHQNLAIIGHVDHGKSTLVGRLLFETGSVPEHVIEQHREEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFDTEDYYFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VAPQTREHVFLARTLGINELIIGVNKMDIV--DYSEETYEDVKTEVDKLLKQVQFNANDAKYIPISAFEGDNVAESSDNTSWFDGPSLLEALNNLPEP 216          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.485e-56
Identity = 112/229 (48.91%), Postives = 147/229 (64.19%), Query Frame = 3
Query:   63 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEP 740
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD AVL+  +D    G +       QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +    LK VG+NP+ + F+P++   GDN+ ++S N  WY GPTL   +D    P
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVDDAKSGIQP------QTREHVFLSRTLGITQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPDNIDFIPVASLLGDNVFKKSENTPWYNGPTLAQVIDGFQPP 221          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.245e-56
Identity = 111/229 (48.47%), Postives = 148/229 (64.63%), Query Frame = 3
Query:   63 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEP 740
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R +KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD A+L+  +D    G +       QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +    LK VG+NP+ + FVP++   GDN+ ++S    WY GPTL + +D    P
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLKKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDAKSGIQP------QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPDNITFVPVASLHGDNVFKKSDKTPWYNGPTLAEVIDAFQPP 221          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.238e-56
Identity = 105/221 (47.51%), Postives = 149/221 (67.42%), Query Frame = 3
Query:   72 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEK-VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 731
            +K H+N+V IGHVD+GKST  G ++Y  G +DKR +E++E+EA E N+ ++  +W LD  + ER++G T+++    FET K + T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG+NP+K + F+P SG  G N+ E+S    WY G   +  LDN+
Sbjct:   71 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNL 291          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.238e-56
Identity = 105/221 (47.51%), Postives = 149/221 (67.42%), Query Frame = 3
Query:   72 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEK-VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 731
            +K H+N+V IGHVD+GKST  G ++Y  G +DKR +E++E+EA E N+ ++  +W LD  + ER++G T+++    FET K + T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG+NP+K + F+P SG  G N+ E+S    WY G   +  LDN+
Sbjct:   71 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNL 291          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.238e-56
Identity = 111/229 (48.47%), Postives = 147/229 (64.19%), Query Frame = 3
Query:   63 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEP 740
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD A+L+  +D    G +       QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +    LK VG+NP+ + FVP++   GDN+ ++S    WY GPTL + +D    P
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDAKSGIQP------QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPDNITFVPVASLHGDNVFKKSDKTPWYNGPTLAEVIDAFQPP 221          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.442e-56
Identity = 111/229 (48.47%), Postives = 146/229 (63.76%), Query Frame = 3
Query:   63 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI--IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV-SSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEP 740
            M KEK  +N+  IGHVD+GKSTT G L+   G ID ++I R  KEA E  K  F++A+V+D LK ERERG+TID+A  KF T KY  T++D PGHRDFIKNMITG SQAD A+L+  +D    G +       QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +    LK VG+NP  + FVP++   GDN+ ++S    WY GPTL + +D    P
Sbjct:    1 MAKEKPILNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLRKEAEEKGKAGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDAKSGIQP------QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPANITFVPVASLHGDNVFKKSDRTPWYNGPTLAEVIDAFQPP 221          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.588e-55
Identity = 110/226 (48.67%), Postives = 145/226 (64.16%), Query Frame = 3
Query:   63 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEP 740
            M K K HIN+  IGHVD GKST  GHL+ K G I ++ ++  E           K+ +V+DKL  ERERG+TID+A  KF T KY  TV+D PGHRDF+KNMITG SQAD  VL++ +  G          QT+EH  L+ TLG+ Q+I   NK+D     Y +A+++E+  EVS+ +K VG+NP  VPF+P+S FEGDN+ + S N  WYKG TL+ ALDN+  P
Sbjct:    1 MAKTKEHINLAFIGHVDHGKSTLVGHLLLKAGAIAEQQLDDGEN----------KFRFVMDKLGEERERGVTIDLAHQKFSTKKYDYTVVDCPGHRDFVKNMITGASQADAGVLVVAADDGVMP-------QTKEHVFLSKTLGINQLIVAINKIDLV--DYDEAKFNELKDEVSALIKTVGFNPADVPFIPVSAFEGDNIKDASPNTSWYKGDTLMQALDNLAAP 207          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.686e-55
Identity = 109/226 (48.23%), Postives = 148/226 (65.49%), Query Frame = 3
Query:   63 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEP 740
            M KEKTH+N+  IGHVD GKST  GHL+   G I ++ ++  E           K+ +V+DKL  ERERG+TID+A  KFET KY  TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMD     YS+ +++E+ +E+ + +  VG+ P  VPF+P+S FEGDN+ E+S+N  WYKG TL+  LD ++EP
Sbjct:    1 MAKEKTHMNLAFIGHVDHGKSTLVGHLLLLEGAIAEQQLDEGED----------KFRFVMDKLGEERERGVTIDLAHAKFETQKYEYTVVDCPGHRDFVKNMITGASQADAAVLVVAANDGIMP-------QTKEHIFLSRTLGINQLIIAINKMDVV--DYSEDKFNELKEELGALISTVGFKPSDVPFIPVSAFEGDNISEKSSNTPWYKGNTLVQELDALDEP 207          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.781e-54
Identity = 102/221 (46.15%), Postives = 149/221 (67.42%), Query Frame = 3
Query:   72 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEK-VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 731
            +K H+N+V IGHVD+GKST  G +++  G +DKR +E++E+EA E N+ ++  +W LD  + ER++G T+++    FET + + T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG++P+K + F+P SG  G N+ E+S    WY G   +  LDN+
Sbjct:  200 KKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETERKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANVKEQSDFCPWYTGLPFIPYLDNL 420          
The following BLAST results are available for this feature:
BLAST of CB290763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_HALWD1.457e-5648.43Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
EF1A_METMP2.485e-5648.91Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM53.245e-5648.47Elongation factor 1-alpha OS=Methanococcus maripal... [more]
ERF3A_MOUSE4.238e-5647.51Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN4.238e-5647.51Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_METM74.238e-5648.47Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM69.442e-5648.47Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METS33.588e-5548.67Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_METST4.686e-5548.23Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
ERF3B_PONAB1.781e-5446.15Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290763 ID=CB290763; Name=CB290763; organism=Citrus sinensis; type=EST; length=740bp
GGTCGGCGAGAGAGAAACCTTTTAGCAAATTTCATATCAAGGTTTTATAC
TAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCAT
CGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACA
AGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCT
GCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCT
CAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGT
TCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGT
GACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGT
CCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGG
ATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAG
CAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTACTC
AAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGA
AGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTC
GAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGG
TCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCG
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