CB290763

Overview
NameCB290763
Unique NameCB290763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBA (Elongation factor Tu OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 64/201 (31.84%), Postives = 97/201 (48.26%), Query Frame = 3
Query:   69 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDN 662
            + K H+NI  IGHVD GK+T T  +   L            K     NK +  Y  + D    E+ RGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D           + + +E+   L K  +  +K PF+    +   EG++
Sbjct:    8 RSKPHLNIGTIGHVDHGKTTLTAAITTTLA-----------KLVGGKNK-AIAYDQI-DNAPEEKARGITIATSHQEYETPNRHYAHVDCPGHADYVKNMITGAAQMDAAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVYLNKADMLAADERDDMVEMVKEEIKDLLNKYNFPGDKTPFISGSALKALEGED 188          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EFTU_LACLS (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 65/192 (33.85%), Postives = 98/192 (51.04%), Query Frame = 3
Query:   60 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 635
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI 171          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EFTU_LACLM (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 65/192 (33.85%), Postives = 98/192 (51.04%), Query Frame = 3
Query:   60 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 635
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI 171          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EFTU_LACLA (Elongation factor Tu OS=Lactococcus lactis subsp. lactis GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 65/192 (33.85%), Postives = 98/192 (51.04%), Query Frame = 3
Query:   60 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 635
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI 171          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EFTU_LACF3 (Elongation factor Tu OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 69/200 (34.50%), Postives = 96/200 (48.00%), Query Frame = 3
Query:   69 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD 659
            + K H+NI  IGHVD GK+T T  +   L        E +                 +D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D           D +  EV   L +  +  + VP V    +   EGD
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITKVLAAKGLAKAEDYSD---------------IDAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVEYIVVFLNKTDLVD---DDELVDLVEMEVRDLLSEYDFPGDDVPVVRGSALKALEGD 183          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EFTU_KINRD (Elongation factor Tu OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 73/225 (32.44%), Postives = 112/225 (49.78%), Query Frame = 3
Query:   69 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALDNIN 734
            + K H+NI  IGH+D GK+T T         I + + ++F     E+NK S      +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH +LA  +GV  ++   NK D       +   + +  EV   L    +  + VP V +S     EGD         +W  G  L++ +D ++
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITRVLHDKFP----ELNKASAFDQ--IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVILARQVGVPYIVVALNKADMVE---DEELLELVEMEVRELLSSYEFPGDDVPVVRVSALKALEGD--------AEW--GDKLMELMDAVD 199          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EFTU_GUITH (Elongation factor Tu, chloroplastic OS=Guillardia theta GN=tufA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 65/189 (34.39%), Postives = 95/189 (50.26%), Query Frame = 3
Query:   69 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 635
            + K H+NI  IGHVD GK+T T  +   L               ++   +S K+  + D    ER RGITI+ A  ++ET K+Y   +D PGH D++KNMITG +Q D A+L+  +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L+K  +   ++PFV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAISATL---------------SQYTGKSKKFDEI-DSAPEERARGITINTAHVEYETDKWYYAHVDCPGHADYVKNMITGAAQMDGAILVCSAANGPMP-------QTREHILLAKQVGVPYIVVFLNKADMVD---DEELLELVQLEVQELLEKYDFPGSEIPFV 170          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EFTU_GLOVI (Elongation factor Tu OS=Gloeobacter violaceus GN=tufA PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 3
Query:   69 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 635
            + K H+NI  IGHVD GK+T T  +   L  + +   +++++               +D+   E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +       E+V+ EV   L K  +  + VP V
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITMTLAALGRAKAKKYDE---------------IDQAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPNIVVFLNKKD----QLDDPELLELVELEVRELLSKYDFPGDDVPIV 171          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EFTU_CLOK5 (Elongation factor Tu OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 64/190 (33.68%), Postives = 97/190 (51.05%), Query Frame = 3
Query:   69 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 635
            + K H+NI  IGHVD GK+T T  +   L    K    ++++               +DK   E+ERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  + VP +
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMVLAKEGKASATKYDE---------------IDKAPEEKERGITINTAHVEYETEVRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKSD----QVDDPELIELVEMEVRELLSEYGFPGDDVPII 171          
BLAST of CB290763 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBM (Elongation factor Tu OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 73/222 (32.88%), Postives = 110/222 (49.55%), Query Frame = 3
Query:   69 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN 728
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDS 200          
The following BLAST results are available for this feature:
BLAST of CB290763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_LEPBA4.427e-2131.84Elongation factor Tu OS=Leptospira biflexa serovar... [more]
EFTU_LACLS4.427e-2133.85Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLM4.427e-2133.85Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLA4.427e-2133.85Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACF34.427e-2134.50Elongation factor Tu OS=Lactobacillus fermentum (s... [more]
EFTU_KINRD4.427e-2132.44Elongation factor Tu OS=Kineococcus radiotolerans ... [more]
EFTU_GUITH4.427e-2134.39Elongation factor Tu, chloroplastic OS=Guillardia ... [more]
EFTU_GLOVI4.427e-2133.16Elongation factor Tu OS=Gloeobacter violaceus GN=t... [more]
EFTU_CLOK54.427e-2133.68Elongation factor Tu OS=Clostridium kluyveri (stra... [more]
EFTU_CLOBM4.427e-2132.88Elongation factor Tu OS=Clostridium botulinum (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290763 ID=CB290763; Name=CB290763; organism=Citrus sinensis; type=EST; length=740bp
GGTCGGCGAGAGAGAAACCTTTTAGCAAATTTCATATCAAGGTTTTATAC
TAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCAT
CGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACA
AGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCT
GCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCT
CAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGT
TCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGT
GACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGT
CCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGG
ATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAG
CAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTACTC
AAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGA
AGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTC
GAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGG
TCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCG
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