CB290774

Overview
NameCB290774
Unique NameCB290774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_PONAB (60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 9.975e-25
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_HUMAN (60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 9.975e-25
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_LAPHA (60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.303e-24
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_BOVIN (60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.701e-24
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_RAT (60S ribosomal protein L36 OS=Rattus norvegicus GN=Rpl36 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 4.950e-24
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            VGLNKGH VTK    PR + R+G+ +K   FVR +IREV  FAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_DANRE (60S ribosomal protein L36 OS=Danio rerio GN=rpl36 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.466e-24
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            VGLNKGH VTK    P+ + R+G+ +K   F R +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNTLAAMR 98          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_CHICK (60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.466e-24
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            VGLNKG+ VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGYKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_ICTPU (60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.191e-23
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN---ALRKSRA 300
            VGL KGH VTK    P+ + R G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN   A+RK+ A
Sbjct:    9 VGLKKGHPVTKNVTKPKHSRRGGRLTKHSKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNILAAMRKAAA 102          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_CAEEL (60S ribosomal protein L36 OS=Caenorhabditis elegans GN=rpl-36 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.219e-22
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   19 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            GL VGLNKGH  T+  +  R    KG  SK+   VR ++RE+ GFAPYE+R+ E+L++ KDKRALK  KR++GTH+RAK KREE+ N +   R
Sbjct:    8 GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQR 100          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_MOUSE (60S ribosomal protein L36 OS=Mus musculus GN=Rpl36 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.593e-22
Identity = 52/86 (60.47%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   28 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 285
            VGLNKGH VTK    PR + R+ + +    FVR +IREV GFAPYE+R  ELLKV K KRALK  K+++GTH RAK+KREE+SN L
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKRALKFIKKRVGTHIRAKRKREELSNVL 94          
The following BLAST results are available for this feature:
BLAST of CB290774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL36_PONAB9.975e-2562.2260S ribosomal protein L36 OS=Pongo abelii GN=RPL36... [more]
RL36_HUMAN9.975e-2562.2260S ribosomal protein L36 OS=Homo sapiens GN=RPL36... [more]
RL36_LAPHA1.303e-2462.2260S ribosomal protein L36 OS=Lapemis hardwickii GN... [more]
RL36_BOVIN1.701e-2462.2260S ribosomal protein L36 OS=Bos taurus GN=RPL36 P... [more]
RL36_RAT4.950e-2461.1160S ribosomal protein L36 OS=Rattus norvegicus GN=... [more]
RL36_DANRE6.466e-2460.0060S ribosomal protein L36 OS=Danio rerio GN=rpl36 ... [more]
RL36_CHICK6.466e-2461.1160S ribosomal protein L36 OS=Gallus gallus GN=RPL3... [more]
RL36_ICTPU4.191e-2359.5760S ribosomal protein L36 OS=Ictalurus punctatus G... [more]
RL36_CAEEL1.219e-2252.6960S ribosomal protein L36 OS=Caenorhabditis elegan... [more]
RL36_MOUSE1.593e-2260.4760S ribosomal protein L36 OS=Mus musculus GN=Rpl36... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01de03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01de03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290774 ID=CB290774; Name=CB290774; organism=Citrus sinensis; type=EST; length=476bp
GCACGTGGGCCAAATACTGGTCTCTTTGTTGGATTAAACAAGGGTCATAT
TGTGACGAAGAAGGAACTGCCGCCACGCCCAGCAGATCGCAAAGGGAAAA
CAAGCAAAAGGGTCCACTTCGTGAGGACTGTGATTAGGGAAGTTGCTGGC
TTTGCACCCTATGAGAAAAGGATCACTGAGCTTCTTAAAGTCGGCAAGGA
CAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTTGGCACTCACAAGAGGG
CAAAGAAGAAGCGGGAGGAGATGTCTAATGCCCTTCGCAAGAGTAGGGCC
CCTGGAGGTGGAGAGAAGAAGAAGTGATGCATAACTTTGCTAGATGTCTT
GTTCACCTGAACTTGGGTTATTAAATTTAGCACAGTGTTTTAGCCTATGT
TGTTTGCCTTTTTTTCCCCTTCATTTCAAAAACTGAGTTAAAGATGTCAA
TTTGAGTGCTAAAAAAAAAAAAAAAA
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