CB290774

Overview
NameCB290774
Unique NameCB290774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_TRIHM (60S ribosomal protein L36 OS=Trichoderma hamatum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.080e-22
Identity = 52/94 (55.32%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   16 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            TGL VGLNKGH  T + + PR +  KG  SKR  FVR V++EVAG APYE+R+ ELL+  KDKRA K+AK++LGT  RAK+K +E+   + +SR
Sbjct:    9 TGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESR 102          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_CANAL (60S ribosomal protein L36 OS=Candida albicans GN=RPL36 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.003e-21
Identity = 47/94 (50.00%), Postives = 71/94 (75.53%), Query Frame = 1
Query:   16 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            +G+  G+NKG   T KE+ P+ + RKG +S+R  FVR++++EVAG APYE+R+ EL++   +KRA K+AK++LGTHKRA +K EEM+  + +SR
Sbjct:    4 SGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNAGEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_DICDI (60S ribosomal protein L36 OS=Dictyostelium discoideum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.671e-19
Identity = 47/95 (49.47%), Postives = 69/95 (72.63%), Query Frame = 1
Query:   16 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRA 300
            +G+  G NKGH V K+ +      +K   +KRV  +R VIRE++GF+PYE+R++ELLK G DKRALKVAK++LG+ +  KKKR++++N  RK+ A
Sbjct:   12 SGIIKGFNKGHAVAKRTVTS--TFKKQVVTKRVAAIRDVIREISGFSPYERRVSELLKSGLDKRALKVAKKRLGSIQAGKKKRDDIANINRKASA 104          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36_DROME (60S ribosomal protein L36 OS=Drosophila melanogaster GN=RpL36 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.795e-19
Identity = 52/102 (50.98%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   22 LFVGLNKGHIVTKKELPPRPADRKGK----------TSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            L +GLNKGH  +K        D+K K           ++   F+R ++REV G APYEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE+SN L + R
Sbjct:    7 LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36B_YEAST (60S ribosomal protein L36-B OS=Saccharomyces cerevisiae GN=RPL36B PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 4.795e-19
Identity = 45/94 (47.87%), Postives = 67/94 (71.28%), Query Frame = 1
Query:   16 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            TG+ +GLNKG  VT+    P+ + +KG  S R  FVR+++RE+AG +PYE+R+ +L++   +KRA KVAK++LG+  RAK K EEM+N +  SR
Sbjct:    5 TGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 98          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36A_YEAST (60S ribosomal protein L36-A OS=Saccharomyces cerevisiae GN=RPL36A PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 6.262e-19
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 1
Query:   16 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            TG+ +GLNKG  VT     P+ + +KG  S R  FVR+++RE+AG +PYE+R+ +L++   +KRA KVAK++LG+  RAK K EEM+N +  SR
Sbjct:    5 TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 98          
BLAST of CB290774 vs. ExPASy Swiss-Prot
Match: RL36X_HUMAN (Putative 60S ribosomal protein L36-like 1 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.179e-19
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   22 LFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 297
            + VGLNKGH +TK    PR +   G+ +K    VR +I+EV GF PYE+   ELLKV KDK+ALK  K+++GTH   K+KREE+SN L  +R
Sbjct:    7 MVVGLNKGHKLTKNLSKPRHSRSLGRPTKHTKCVRGMIQEVCGFTPYERCTMELLKVSKDKQALKFIKKRVGTHIHTKRKREELSNVLAITR 98          
The following BLAST results are available for this feature:
BLAST of CB290774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL36_TRIHM2.080e-2255.3260S ribosomal protein L36 OS=Trichoderma hamatum G... [more]
RL36_CANAL3.003e-2150.0060S ribosomal protein L36 OS=Candida albicans GN=R... [more]
RL36_DICDI3.671e-1949.4760S ribosomal protein L36 OS=Dictyostelium discoid... [more]
RL36_DROME4.795e-1950.9860S ribosomal protein L36 OS=Drosophila melanogast... [more]
RL36B_YEAST4.795e-1947.8760S ribosomal protein L36-B OS=Saccharomyces cerev... [more]
RL36A_YEAST6.262e-1947.8760S ribosomal protein L36-A OS=Saccharomyces cerev... [more]
RL36X_HUMAN8.179e-1951.09Putative 60S ribosomal protein L36-like 1 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01de03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01de03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290774 ID=CB290774; Name=CB290774; organism=Citrus sinensis; type=EST; length=476bp
GCACGTGGGCCAAATACTGGTCTCTTTGTTGGATTAAACAAGGGTCATAT
TGTGACGAAGAAGGAACTGCCGCCACGCCCAGCAGATCGCAAAGGGAAAA
CAAGCAAAAGGGTCCACTTCGTGAGGACTGTGATTAGGGAAGTTGCTGGC
TTTGCACCCTATGAGAAAAGGATCACTGAGCTTCTTAAAGTCGGCAAGGA
CAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTTGGCACTCACAAGAGGG
CAAAGAAGAAGCGGGAGGAGATGTCTAATGCCCTTCGCAAGAGTAGGGCC
CCTGGAGGTGGAGAGAAGAAGAAGTGATGCATAACTTTGCTAGATGTCTT
GTTCACCTGAACTTGGGTTATTAAATTTAGCACAGTGTTTTAGCCTATGT
TGTTTGCCTTTTTTTCCCCTTCATTTCAAAAACTGAGTTAAAGATGTCAA
TTTGAGTGCTAAAAAAAAAAAAAAAA
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