CB290800

Overview
NameCB290800
Unique NameCB290800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: RX24L_ARATH (Probable disease resistance protein RXW24L OS=Arabidopsis thaliana GN=RXW24L PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 62/231 (26.84%), Postives = 107/231 (46.32%), Query Frame = -1
Query:  217 GSKIVVTTRNVSVARMMRSTNIISIKP--LPEDEFWSLFERFAF----FGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAP----LLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGY--LNAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKE 873
            G K+++T+R  S+A M   T  IS KP  L   + W+LF+  A          VD E++E + +++ + C GL LA KV G LL  K T         +++W+R+ ++    + E   G  +     L +S+ +LP+   +K CF Y A FP+D+ ++  +L   W A+G                  Y   L  R+     E+         C++HD++ +   F +++E
Sbjct:  292 GWKVLLTSRTESIA-MRGDTTYISFKPKCLSIPDSWTLFQSIAMPRKDTSEFKVD-EEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYT---------LHDWKRLSENIGSHIVERTSGNNSSIDHVLSVSFEELPN--YLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYDGETIRDTGDSYIEELVRRNMVIS-ERDVMTSRFETCRLHDMMREICLFKAKEE 508          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: RPP8_ARATH (Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.471e-12
Identity = 53/171 (30.99%), Postives = 80/171 (46.78%), Query Frame = -1
Query:  394 GSKIVVTTRNVSVARMMRSTNI-ISIKPLPEDEFWSLFERFAFFGHSSVD---REKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILD---SEV----WKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQG 873
            G K+++T+RN  V      T +      L  +E W L ER  F      +    E++E + +++   C GLPLA K  G LL +K T         V EW+R+ D   S++    W  +     +   L LSY DLP++  +K CF   A FP+D  ++   L   W A+G
Sbjct:  293 GWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHT---------VPEWKRVFDNIGSQIVGGSWLDDNSLNSVYRILSLSYEDLPTH--LKHCFLNLAHFPEDSEISTYSLFYYWAAEG 452          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: DRL9_ARATH (Probable disease resistance protein At1g58602 OS=Arabidopsis thaliana GN=At1g58602 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.471e-12
Identity = 51/172 (29.65%), Postives = 85/172 (49.42%), Query Frame = -1
Query:  397 GSKIVVTTRNVSVARMMRSTNIISIKP--LPEDEFWSLFERFAFFGHSSVD---REKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKV--------EEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQ 873
            G K+++T+RN S+     +T   + KP  L  D+ W LF+R AF  + + +    E++E +  ++   C GLPLA KV G +L +K T          ++W+R+ ++    +        ++        L LS+ +LP  S +K CF Y A FP+DY +    L   W A+
Sbjct:  297 GWKLLLTSRNESIVAPT-NTKYFNFKPECLKTDDSWKLFQRIAFPINDASEFEIDEEMEKLGEKMIEHCGGLPLAIKVLGGMLAEKYTS---------HDWRRLSENIGSHLVGGRTNFNDDNNNSCNYVLSLSFEELP--SYLKHCFLYLAHFPEDYEIKVENLSYYWAAE 456          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: RP8L1_ARATH (Putative disease resistance protein RPP8-like protein 1 OS=Arabidopsis thaliana GN=RPP8L1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.445e-11
Identity = 59/228 (25.88%), Postives = 99/228 (43.42%), Query Frame = -1
Query:  217 GSKIVVTTRNVSVARMMRSTNI-ISIKPLPEDEFWSLFERFAFFGHSSVDR-EKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILD------SEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYL-NAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKE 873
            G K+++T+RN  V       +     + L  +E W L E+  F           +E + +++   C GLPLA KV G LL  K T         V EW+R+ D      +    +++    +   L LSY +LP    +K CF Y A FP+ Y ++ + L N   A+G + ++           +Y   LA R+     +K         C+MHD++ +     +++E
Sbjct:  268 GWKMLLTSRNEGVGIHADPKSFGFKTRILTPEESWKLCEKIVFHRRDETGTLSDMEAMGKEMVTCCGGLPLAVKVLGGLLATKHT---------VPEWKRVYDNIGPHLAGRSSLDDNLNSIYRVLSLSYENLP--MCLKHCFLYLAHFPEYYEIHVKRLFNYLAAEGIITSSDDGTTIQDKGEDYLEELARRNMI-TIDKNYMFLRKKHCQMHDMMREVCLSKAKEE 483          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: R1B17_SOLDE (Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 50/225 (22.22%), Postives = 104/225 (46.22%), Query Frame = -1
Query:  205 SKIVVTTRNVSVARMMR-STNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLNAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKE--CLWV 870
            S+I++TTR+  VA+     ++ + ++   EDE W L E+   FG        L+ +  +IA+ C+ LPL+  +   +L +         +  V  W+++ ++    +    + ++     SY+ LP +  +K CF Y   F +D  ++   LI LW+++ ++ +            Y   L  R+     ++      +  C++HD++ DF +  + +E   LW+
Sbjct:  671 SRIILTTRHHEVAKYASVHSDPLHLRMFDEDESWKLLEK-KVFGEKRCSSLLLKDVGLRIAKMCEQLPLSIVLVAGILSEM--------EKEVECWEQVANNLGTHIHNDSRAIVNQ---SYHVLPCH--LKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDIAEGYLENLIGRNLVMVTQRADSDGKVKACRLHDVLLDFCKERAAEENFLLWI 881          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: DRL20_ARATH (Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 67/250 (26.80%), Postives = 112/250 (44.80%), Query Frame = -1
Query:  145 GSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEP-IARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQ---RILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLN-AXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKECLWV--EINGTKELVINFFGEKVRHI 873
            G K+  TTR+  V   M   + + ++ L E+  + LF++    G +++  +   P +AR +A+KC GLPLA  V G  +  KRT         + EW+    +L+S   +   ++  +L  L  SY++L     VK    YCA++P+D  + K +LI  W+ +  ++ +           E    L   S   E++       +    MHD+V + A        LW+  E+   KE  I   G  VR I
Sbjct:  282 GRKLAFTTRSQEVCARMGVEHPMEVQCLEENVAFDLFQKKV--GQTTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRT---------IQEWRHAIHVLNSYAAEFIGMEDKVLPLLKYSYDNL-KGEQVKSSLLYCALYPEDAKILKEDLIEHWICEEIIDGSEGIEKAEDKGYEIIGCLVRASLLMEWDDGDGRRAVC---MHDVVREMA--------LWIASELGIQKEAFIVRAGVGVREI 508          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: RP8L4_ARATH (Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 52/171 (30.41%), Postives = 81/171 (47.37%), Query Frame = -1
Query:  394 GSKIVVTTRNVSVARMMRSTNI-ISIKPLPEDEFWSLFERFAFFGHSSVD---REKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKV-------EEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQG 873
            G K+++T+RN  V      T +      L  +E W L ER  F      +    E++E + +++   C GLPLA K  G LL +K T         V EW+R+ D+   ++       +     +   L LSY DLP++  +K  F Y A FP+D  +  ++L N W A+G
Sbjct:  293 GWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGLLANKHT---------VPEWKRVSDNIGSQIVGGSCLDDNSLNSVNRILSLSYEDLPTH--LKHRFLYLAHFPEDSKIYTQDLFNYWAAEG 452          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: R1B8_SOLDE (Putative late blight resistance protein homolog R1B-8 OS=Solanum demissum GN=R1B-8 PE=5 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 51/225 (22.67%), Postives = 103/225 (45.78%), Query Frame = -1
Query:  205 SKIVVTTRNVSVARMMR-STNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLNAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKE--CLWV 870
            S+I++ TR+  VA+      + + ++ L EDE W L E+   FG  S     L+ +  +IA+ C  LPL+  +   +L +         +  V  W+++ ++    +    + ++     SY+ LP +  +K CF Y   F +D  ++   LI LW+++ ++ +            Y   L  R+     ++      +  C++HD++ DF +  + +E   LW+
Sbjct:  590 SRIILMTRHHEVAKYASVHGDPLHLRMLDEDESWKLLEK-KVFGEQSCSSPLLKNVGLRIAKMCGQLPLSIVLVAGILSEM--------EKEVECWEQVANNLGSHIHNDSRAIVDQ---SYHVLPCH--LKSCFLYFGAFLEDRVIDISRLIGLWISESFIKSCEGRRLEYIAEGYLENLIGRNLVMVTQRAISDGKVKACRLHDVLLDFCKKRAAEENFLLWI 800          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: R1B14_SOLDE (Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 50/225 (22.22%), Postives = 103/225 (45.78%), Query Frame = -1
Query:  205 SKIVVTTRNVSVARMMR-STNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLNAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKE--CLWV 870
            S+I++TTR+  VA+     ++ + ++   EDE W L E+   FG        L+ +  +IA+ C  LPL+  +   +L +         +  V  W+++ ++    +    + ++     SY+ LP +  +K CF Y   F +D  ++   LI LW+++ ++ +            Y   L  R+     ++      +  C++HD++ DF +  + +E   LW+
Sbjct:  671 SRIILTTRHHEVAKYASVHSDPLHLRMFDEDESWKLLEK-KVFGEKRCSSLLLKDVGLRIAKMCGQLPLSIVLVAGILSEM--------EKEVECWEQVANNLGTHIHNDSRAIVNQ---SYHVLPCH--LKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDIAEGYLENLIGRNLVMVTQRADSDGKVKACRLHDVLLDFCKERAAEENFLLWI 881          
BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: DRL14_ARATH (Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 65/250 (26.00%), Postives = 111/250 (44.40%), Query Frame = -1
Query:  145 GSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEP-IARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQR---ILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLN-AXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKECLWV--EINGTKELVINFFGEKVRHI 873
            G K+  T+R+++V   M     + ++ L E+  + LF++    G  ++  +   P +AR +A+KC GLPLA  V G  +  KRT         + EW+    +L+S   +   ++  +L  L  SY++L     VK    YCA++P+D  + K +LI  W+ +  ++ +           +    L   S   E         ++   MHD+V + A        LW+  E+   KE  I   G  VR I
Sbjct:  282 GCKLAFTSRSLNVCTSMGDEEPMEVQCLEENVAFDLFQKKV--GQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRT---------IQEWRNAIHVLNSYAAEFIGMEDKILPLLKYSYDNLKGEH-VKSSLLYCALYPEDAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSSVI---MHDVVREMA--------LWIASELGIQKEAFIVRAGVGVREI 508          
The following BLAST results are available for this feature:
BLAST of CB290800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RX24L_ARATH6.486e-1226.84Probable disease resistance protein RXW24L OS=Arab... [more]
RPP8_ARATH8.471e-1230.99Disease resistance protein RPP8 OS=Arabidopsis tha... [more]
DRL9_ARATH8.471e-1229.65Probable disease resistance protein At1g58602 OS=A... [more]
RP8L1_ARATH1.445e-1125.88Putative disease resistance protein RPP8-like prot... [more]
R1B17_SOLDE2.465e-1122.22Putative late blight resistance protein homolog R1... [more]
DRL20_ARATH2.465e-1126.80Probable disease resistance protein At1g63360 OS=A... [more]
RP8L4_ARATH3.219e-1130.41Probable disease resistance RPP8-like protein 4 OS... [more]
R1B8_SOLDE5.491e-1122.67Putative late blight resistance protein homolog R1... [more]
R1B14_SOLDE5.491e-1122.22Putative late blight resistance protein homolog R1... [more]
DRL14_ARATH5.491e-1126.00Probable disease resistance protein At1g62630 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01df05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290800 ID=CB290800; Name=CB290800; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTGATGAAATAGCCATGGATTGAAATAAAGATGGAT
TGTAATGACTTGTATCATAAATTAAGAGGCTACGCAATCGATCAAATTCA
AAAAAGGACATAGGAAATGAAGCTCCTCTTTGAAAATTTAACCCTATGTG
ACGGACTTTCTCACCAAAAAAGTTTATGACTAATTCCTTGGTACCATTTA
TTTCTACCCACAAACATTCTTTTCTACTTACAAATTGGGCAAAATCATGT
ACTATGTCATGCATCTTACACCTCAGAATATCATCATCGTCATCATCTTT
TTCAAACTCTTGAAAGAAAGAGCGTGTTGCTAAGATGTTGAAATACTCTT
CTCCAATCATCTCCATTTCTTCGTCTTCATCTGCATTAAGGTAACCTTGA
GCCATCCATAGATTAATCAATTCCCTTTTATTCATATTGTAGTCTTTTGG
AAAGACAGCACAATATGAGAAGCACCGTTTTACCATAGAATTGGAGGGCA
AATCGTTATAACTCAACAACAAAGGAGCCAAAAGACCTTGCTTAATCTCT
TCTACTTTCCACACTTCACTATCTAAAATTCTTTGCCACTCATTTACTAT
ACTTTTAGAGGACAAGAGATTCCCTGTACGTTTATCGCACAAGAGGTTCC
CTGTTACCTTTGCAGCAAGAGGCAGGCCTTTGCACTTGCGTGCAATTTGT
CGTGCGATTGGTTCTAATTTTTCACGATCAACAGAAGAATGACCGAAAAA
TGCGAACCGCTCGAACAACGACCAGAATTCATCTTCAGGCAATGGCTTAA
TGGAGATAATATTTGTTGATCTCATCATACGGGCAACTGACACATTACGT
GTGGTAACCACAATTTTACTTCCGGG
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