CB290800

Overview
NameCB290800
Unique NameCB290800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB290800 vs. ExPASy Swiss-Prot
Match: DRL13_ARATH (Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 57/236 (24.15%), Postives = 105/236 (44.49%), Query Frame = -1 
Query:  217 GSKIVVTTRNVSVARMMRSTNIISIKP--LPEDEFWSLFERFAFFGHSSV-----DREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKV--------EEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQG--YLNAXXXXXXXXXXXEYFNILATRSFFQEFEKXXXXXDILRCKMHDIVHDFAQFVSRKE 873
            G K+++T+RN ++       + ++ KP  L  DE W L +R AF    ++     D+E ++ +A+++ + CK LPLA K+ G LL  K T         + +W+ I ++ +  +        E     +   L LS+  LP    +K C  Y A +P+D+ +    L  +W A+G  Y               Y   L  R+     E+        +C++HD++ +     +++E
Sbjct:  288 GWKVLLTSRNDAI-----HPHCVTFKPELLTHDECWKLLQRIAFSKQKTITGYIIDKEMVK-MAKEMTKHCKRLPLAVKLLGGLLDAKHT---------LRQWKLISENIISHIVVGGTSSNENDSSSVNHVLSLSFEGLP--GYLKHCLLYLASYPEDHEIEIERLSYVWAAEGITYPGNYEGATIRDVADLYIEELVKRNMVIS-ERDALTSRFEKCQLHDLMREICLLKAKEE 505
The following BLAST results are available for this feature:
BLAST of CB290800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
DRL13_ARATH5.491e-1124.15Putative disease resistance protein At1g59780 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01df05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290800 ID=CB290800; Name=CB290800; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTGATGAAATAGCCATGGATTGAAATAAAGATGGAT
TGTAATGACTTGTATCATAAATTAAGAGGCTACGCAATCGATCAAATTCA
AAAAAGGACATAGGAAATGAAGCTCCTCTTTGAAAATTTAACCCTATGTG
ACGGACTTTCTCACCAAAAAAGTTTATGACTAATTCCTTGGTACCATTTA
TTTCTACCCACAAACATTCTTTTCTACTTACAAATTGGGCAAAATCATGT
ACTATGTCATGCATCTTACACCTCAGAATATCATCATCGTCATCATCTTT
TTCAAACTCTTGAAAGAAAGAGCGTGTTGCTAAGATGTTGAAATACTCTT
CTCCAATCATCTCCATTTCTTCGTCTTCATCTGCATTAAGGTAACCTTGA
GCCATCCATAGATTAATCAATTCCCTTTTATTCATATTGTAGTCTTTTGG
AAAGACAGCACAATATGAGAAGCACCGTTTTACCATAGAATTGGAGGGCA
AATCGTTATAACTCAACAACAAAGGAGCCAAAAGACCTTGCTTAATCTCT
TCTACTTTCCACACTTCACTATCTAAAATTCTTTGCCACTCATTTACTAT
ACTTTTAGAGGACAAGAGATTCCCTGTACGTTTATCGCACAAGAGGTTCC
CTGTTACCTTTGCAGCAAGAGGCAGGCCTTTGCACTTGCGTGCAATTTGT
CGTGCGATTGGTTCTAATTTTTCACGATCAACAGAAGAATGACCGAAAAA
TGCGAACCGCTCGAACAACGACCAGAATTCATCTTCAGGCAATGGCTTAA
TGGAGATAATATTTGTTGATCTCATCATACGGGCAACTGACACATTACGT
GTGGTAACCACAATTTTACTTCCGGG
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