CB290808

Overview
NameCB290808
Unique NameCB290808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1_XENLA (Importin subunit alpha-1 OS=Xenopus laevis GN=kpna1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 7.794e-28
Identity = 65/158 (41.14%), Postives = 98/158 (62.03%), Query Frame = -3
Query:  369 SIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL----KVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWA 830
            SI+KEA W ISNI AG   QIQ +I   ++ PLV LL   +F+ +KEA WA++N TSGG+ +Q+  LV  G ++PL +LL   D + + V L+ + NI     K+GE +K             +++E  GL+KIE LQTHDN+ +Y  A+ ++E+Y++
Sbjct:  343 SIQKEAAWAISNIAAGPAPQIQQMITCGLLSPLVDLLNKGDFKAQKEAVWAVTNYTSGGTVEQVVQLVQCGVLEPLLNLLTIKDSKTILVILDAISNIFLAAEKLGEQEK----------LCLLVEELGGLEKIEALQTHDNHMVYHAALALIEKYFS 490          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA2_XENLA (Importin subunit alpha-2 OS=Xenopus laevis GN=kpna2 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.330e-27
Identity = 64/158 (40.51%), Postives = 98/158 (62.03%), Query Frame = -3
Query:  369 SIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL----KVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYWA 830
            SI+KEA W +SNI AG   QIQ +I   ++ PLV LL+  +F+ +KEA WA++N TSGG+ +Q+  LV  G ++PL +LL   D + + V L+ + NI     K+GE +K             +++E  GL+KIE LQTHDN  +Y  A+ ++E+Y++
Sbjct:  343 SIQKEAAWALSNIAAGPAPQIQQMITCGLLSPLVDLLKKGDFKAQKEAVWAVTNYTSGGTVEQVVQLVQCGVLEPLLNLLTIKDSKTILVILDAISNIFLAAEKLGEQEK----------LCLLVEELGGLEKIEALQTHDNRMVYHAALALIEKYFS 490          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA1A_DICDI (Probable importin subunit alpha-A OS=Dictyostelium discoideum GN=DDB_G0273149 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.736e-27
Identity = 65/152 (42.76%), Postives = 93/152 (61.18%), Query Frame = -3
Query:  381 KSIKKEACWTISNITAGNRAQIQAVIE-ANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILE 833
            KSI+KE+CW +SNITAG  +QI  V+     +  L+ LL H+E +IK+EA WA+SN+T+  S + IQ LV    +K   DLL   D  I+ + LEGL NI+K GE  K      G+N Y  +I E  G   I +LQ H + ++Y+KA +++E
Sbjct:  366 KSIRKESCWALSNITAGEPSQIDVVVSNPKTVTTLISLLSHSEHDIKREACWALSNSTNNSSTKSIQTLVRHNILKHFIDLLNSQDLVILKIVLEGLINIIKEGEKTK---TKTGVNPYVNLISEMQGESIIYDLQEHQSKDVYKKAFELIE 514          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA8_HUMAN (Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.165e-23
Identity = 56/153 (36.60%), Postives = 94/153 (61.44%), Query Frame = -3
Query:  372 SIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 830
            SI+KEA W +SN+ AG    IQ ++  +++ PLV LL++ EF+++KEA W ++N  +G +  Q+  LV  G ++PL +LL  PD +IV + L+ +  IL+  E   E            +I+E  G+D+IE LQ H+N +I + A+ I+E+++
Sbjct:  340 SIQKEAAWALSNVAAGPCHHIQQLLAYDVLPPLVALLKNGEFKVQKEAVWMVANFATGATMDQLIQLVHSGVLEPLVNLLTAPDVKIVLIILDVISCILQAAEKRSEK------ENLCLLIEELGGIDRIEALQLHENRQIGQSALNIIEKHF 486          
BLAST of CB290808 vs. ExPASy Swiss-Prot
Match: IMA2_CAEEL (Importin subunit alpha-2 OS=Caenorhabditis elegans GN=ima-2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.333e-19
Identity = 47/153 (30.72%), Postives = 91/153 (59.48%), Query Frame = -3
Query:  372 SIKKEACWTISNITAGNRAQIQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILERYW 830
            SI KE CW +SNI AG + QIQAV++AN++  L+++L+  + + + EA+WA+SN   GG+++Q+  ++    +  LC  L+  +  ++   LE L  ++       + G  + +++    ++E  GLD +E LQ   + +IY +A +I+ +++
Sbjct:  360 SIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDHKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQTNTDMLNNTLETLYTLM----LTVQNGYPHKVDILHDQVEENGGLDSLERLQESQSEQIYTQAYRIITQFF 508          
The following BLAST results are available for this feature:
BLAST of CB290808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IMA1_XENLA7.794e-2841.14Importin subunit alpha-1 OS=Xenopus laevis GN=kpna... [more]
IMA2_XENLA1.330e-2740.51Importin subunit alpha-2 OS=Xenopus laevis GN=kpna... [more]
IMA1A_DICDI1.736e-2742.76Probable importin subunit alpha-A OS=Dictyostelium... [more]
IMA8_HUMAN1.165e-2336.60Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 ... [more]
IMA2_CAEEL1.333e-1930.72Importin subunit alpha-2 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01df09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290808 ID=CB290808; Name=CB290808; organism=Citrus sinensis; type=EST; length=835bp
TTTTTTTTTTTTTTTATCCATGTAAGATTTTTCCTATGAACCTTTAAATT
GAGAAATACAATTCAAGTTGAAAACTGCAAGCCATCTCGAAAAGTTTTAA
CATATTCCATGAAAGTAAAAAGCCTATGTGCCAGACCAAAAATCCTGACC
CTTGGCGACAACGACAAGACAATATAGAAAATTCCAAAATTCACTGCAAT
GGGAGAAACAATGCCCTATAAAGCTAGTAAAGATATTCTCAAACTACTAC
TTCAACCAAATTTGAAGCCACCAGGTGGAATGTTGGGCTGGTTGGTTGCA
AAACCAAAACCCTGCTGCTGATTTCCAATACCACCTTCTTGGATAAGCTG
CTCTTCCTCCTCTTCCTCAGCCCAATATCTCTCCAAAATCTTCACAGCCT
TCTCATAAATCTCATTGTTGTCGTGGGTTTGCAAATTCTCAATCTTATCT
AATCCATCACACTCATCAATCATTTGGGCATAAACATTAATCCCATTATT
CATTCCCATTTCCTTGTCAGCCTCACCCACCTTCAAAATGTTCTCAAGAC
CCTCTAGACAAACTGTCACAATCCTTGGGTCCGGACAAACCAGAAGATCA
CAGAGAGGTTTGATGCAACCTTGGCTTACCAGGAATTGAATCTGTTGATG
AGATCCTCCAGACGTGGCATTTGAGATAGCCCATGCAGCCTCCTTCTTGA
TTTCGAACTCCGCATGTTGAAGAAGGTGCACAAGAGGAAGGATGATATTG
GCCTCAATAACAGCCTGTATCTGAGCTCTATTCCCAGCTGTAATATTTGA
GATCGTCCAACAAGCTTCTTTCTTGATGCTTTTTT
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