CB290822

Overview
NameCB290822
Unique NameCB290822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290822 vs. ExPASy Swiss-Prot
Match: CP3AJ_CAPAE (Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus GN=CYP3A19 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.712e-22
Identity = 54/154 (35.06%), Postives = 91/154 (59.09%), Query Frame = -1
Query:  353 LNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMAPAMILQNYSF 811
            L++ +  L+ H D Q++ ++E+   F N  P  Y  L  ++ + M++ E LR++P    L R   K+ ++  +++P G  + +P+ ++H +PE W  +  EF+PERF++  +K   N   Y PF +GPR CVG  FAL+  K+A   ILQN+SF
Sbjct:   25 LSFIIYELATHPDVQQKLQEEIDATFPNKAPPTYDALVQMEYLDMVVNETLRMFPIAGRLERLCKKDVEIHGVSIPKGTTVMVPLFVLHNNPEFW-PEPEEFRPERFSKK-NKDGINPYVYLPFGTGPRNCVGMRFALMNIKLALVRILQNFSF 176          
BLAST of CB290822 vs. ExPASy Swiss-Prot
Match: CP4AO_PIG (Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.154e-22
Identity = 64/186 (34.41%), Postives = 104/186 (55.91%), Query Frame = -1
Query:  266 LNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKE-TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMAPAMILQNYSFELSPSYVHAPTAVP--TLHPELGTQLILRKL 811
            ++W +  L+ H + Q+R R+E+  + G+     +  L+ +    M + E LRLYPP+  +SR + K  T     +LPAG+ + L +  +H +P++W +   EF P RFA G   +A++  ++ PF+ G R C+G+ FA+ E K+A A+ L    FEL+P     P A P   L+ + G  L LRKL
Sbjct:  324 ISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPGVSRELSKPITFPDGRSLPAGITLSLSIYGLHHNPQVWPNPE-EFDPSRFAPG---SARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTL--LRFELAPDPSRKPIATPEVVLNSKNGIHLKLRKL 503          
BLAST of CB290822 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.154e-22
Identity = 54/155 (34.84%), Postives = 90/155 (58.06%), Query Frame = -1
Query:  350 LNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMAPAMILQNYSFE 811
            L++T+  L+ H D Q++ + E+ +   N  P  Y  +  ++ + M+L E LRLYP    L R   K+ +L  + +P G  + +P   +H DP+ W +   EF+PERF++  +K + +   Y PF +GPR C+G  FAL+  K+A   I+QN+SF+
Sbjct:  315 LSFTLHSLATHPDIQKKLQDEIDEALPNKAPPTYDTVMEMEYLDMVLNETLRLYPIANRLERVCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWSEPE-EFQPERFSKE-NKGSIDPYVYLPFGNGPRNCLGMRFALMNMKLALTKIMQNFSFQ 467          
BLAST of CB290822 vs. ExPASy Swiss-Prot
Match: C13AA_CAEEL (Putative cytochrome P450 CYP13A10 OS=Caenorhabditis elegans GN=cyp-13A10 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 8.038e-22
Identity = 58/156 (37.18%), Postives = 88/156 (56.41%), Query Frame = -1
Query:  347 LNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLT-ALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMAPAMILQNYSFEL 811
            L++T  LL+ H + Q++ ++E+ +        +  L+ LK +  I+ E LRLYP  T A SR  ++ TKLGN+ +  G  + +    +H D ++WGDDA EFKPER+ +        +  Y  F  GPR CVG   A +E KM  A IL+ Y+FE+
Sbjct:  335 LSYTTFLLATHPEVQKKLQEEIERECIEPSISFDHLSKLKYMDCIIKETLRLYPLGTMANSRRCMRATKLGNVEVEVGTMVQVDTWSLHTDTKIWGDDAKEFKPERWLDPNCDQVFQKGGYISFGLGPRQCVGMRLAYMEEKMLLAHILRKYTFEV 490          
BLAST of CB290822 vs. ExPASy Swiss-Prot
Match: C13A6_CAEEL (Putative cytochrome P450 CYP13A6 OS=Caenorhabditis elegans GN=cyp-13A6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.050e-21
Identity = 53/154 (34.42%), Postives = 89/154 (57.79%), Query Frame = -1
Query:  353 LNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYP-PLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMAPAMILQNYSF 811
            L++   LL+ H + Q + ++EV +   + +  +  L+ LK ++ ++ E LRLYP   TA +R  ++ET +  +    G+ I +    +H +P +WG+D  +FKPER+  G  +  ++  SY PF SGPR C+G   A +E K+  A IL+ YSF
Sbjct:  333 LSYATYLLATHPEIQTKLQEEVDRECPDPEIFFDHLSKLKYLECVMKETLRLYPLGTTANTRKCMRETTINGVNFDEGMNIQVDTWTLHHNPRIWGEDVEDFKPERWENGACEHLEHNGSYIPFGSGPRQCIGMRLAQMEQKILLAQILKEYSF 486          
BLAST of CB290822 vs. ExPASy Swiss-Prot
Match: C13A5_CAEEL (Putative cytochrome P450 CYP13A5 OS=Caenorhabditis elegans GN=cyp-13A5 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.050e-21
Identity = 52/157 (33.12%), Postives = 95/157 (60.51%), Query Frame = -1
Query:  344 LNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLTAL-SRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMAPAMILQNYSFELS 811
            L+++  LL++H + Q++ ++EV +   N +  + +++ LK ++ ++ E LR+YP  + + +R  +KET +  + +  G  + +    +H DP++WG+DA EF+PER+  G  +    +  Y PF  GPRIC+G   A++E KM    IL+ Y+FE S
Sbjct:  335 LSYSSYLLARHPEIQKKLQEEVDRECPNPEVTFDQISKLKYMECVVKEALRMYPLASIVHNRKCMKETNVLGVQIEKGTNVQVDTWTLHYDPKVWGEDANEFRPERWESG-DELFYAKGGYLPFGMGPRICIGMRLAMMEKKMLLTHILKKYTFETS 490          
BLAST of CB290822 vs. ExPASy Swiss-Prot
Match: CP3A7_HUMAN (Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.054e-21
Identity = 56/159 (35.22%), Postives = 91/159 (57.23%), Query Frame = -1
Query:  350 LLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVS---YFPFASGPRICVGQNFALVEAKMAPAMILQNYSFE 814
            +L++ +  L+ H D Q++ ++E+  V  N  P  Y  +  L+ + M++ E LRL+P    L R   K+ ++  + +P GV + +P  ++H DP+ W +   +F PERF    SK  K+ +    Y PF SGPR C+G  FALV  K+A   +LQN+SF+
Sbjct:  313 VLSFIIYELATHPDVQQKVQKEIDTVLPNKAPPTYDTVLQLEYLDMVVNETLRLFPVAMRLERVCKKDVEINGMFIPKGVVVMIPSYVLHHDPKYWREPE-KFLPERF----SKKNKDNIDPYIYTPFGSGPRNCIGMRFALVNMKLALVRVLQNFSFK 466          
BLAST of CB290822 vs. ExPASy Swiss-Prot
Match: CP3A1_RAT (Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.054e-21
Identity = 52/155 (33.55%), Postives = 91/155 (58.71%), Query Frame = -1
Query:  350 LNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMAPAMILQNYSFE 811
            L++ +  L+ H D Q++ ++E+ +   N  P  Y  +  ++ + M+L E LRLYP    L R   K+ ++  + +P G  + +P   +H+DP+ W  +  EF+PERF++  +K + +   Y PF +GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  315 LSFVLHSLATHPDTQKKLQEEIDRALPNKAPPTYDTVMEMEYLDMVLNETLRLYPIGNRLERVCKKDVEINGVFMPKGSVVMIPSYALHRDPQHW-PEPEEFRPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQ 467          
BLAST of CB290822 vs. ExPASy Swiss-Prot
Match: C13B1_CAEEL (Putative cytochrome P450 cyp-13B1 OS=Caenorhabditis elegans GN=cyp-13B1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.054e-21
Identity = 56/152 (36.84%), Postives = 91/152 (59.87%), Query Frame = -1
Query:  359 LNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLT-ALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMAPAMILQNY 811
            L +   LL+KH +  + A++EV  V G+    Y ++  LK +  ++ E LRLYP    A SR  +K T LG++ +  GV+I   ++ +H+  E+WG++A +F PER+ E    ++++ +S+ PF +GPR CVG    L EAK A A +L+ Y
Sbjct:  329 LAYASYLLAKHPEKMKLAQEEVDTVVGSENVSYDDMTKLKYLDAVVRESLRLYPVAWFACSRECVKPTTLGDIYIDKGVKIEADVMSLHRSKEIWGENADDFVPERWLE---PSSRHTMSWIPFGAGPRQCVGMRLGLSEAKTALAHLLRRY 477          
BLAST of CB290822 vs. ExPASy Swiss-Prot
Match: CP3A5_HUMAN (Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.989e-21
Identity = 52/156 (33.33%), Postives = 91/156 (58.33%), Query Frame = -1
Query:  350 LLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMAPAMILQNYSFE 814
            +L++T+  L+ H D Q++ ++E+  V  N  P  Y  +  ++ + M++ E LRL+P    L R   K+ ++  + +P G  + +P   +H DP+ W  +  EF+PERF++   K + +   Y PF +GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  313 VLSFTLYELATHPDVQQKLQKEIDAVLPNKAPPTYDAVVQMEYLDMVVNETLRLFPVAIRLERTCKKDVEINGVFIPKGSMVVIPTYALHHDPKYW-TEPEEFRPERFSK--KKDSIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFK 465          
The following BLAST results are available for this feature:
BLAST of CB290822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
CP3AJ_CAPAE4.712e-2235.06Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus ... [more]
CP4AO_PIG6.154e-2234.41Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2... [more]
CP3AB_MOUSE6.154e-2234.84Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
C13AA_CAEEL8.038e-2237.18Putative cytochrome P450 CYP13A10 OS=Caenorhabditi... [more]
C13A6_CAEEL1.050e-2134.42Putative cytochrome P450 CYP13A6 OS=Caenorhabditis... [more]
C13A5_CAEEL1.050e-2133.12Putative cytochrome P450 CYP13A5 OS=Caenorhabditis... [more]
CP3A7_HUMAN3.054e-2135.22Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1... [more]
CP3A1_RAT3.054e-2133.55Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1... [more]
C13B1_CAEEL3.054e-2136.84Putative cytochrome P450 cyp-13B1 OS=Caenorhabditi... [more]
CP3A5_HUMAN3.989e-2133.33Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dg05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290822 ID=CB290822; Name=CB290822; organism=Citrus sinensis; type=EST; length=814bp
TTTTTTTTTTTTTTTTTACCACAGCATTAATGCCCTTATTCTAATCATGG
CATTATAAAATTTTCCAATGGGGGCAAACATCTTTACTCTAAATAAAACT
AGAGTTGGGTTGAGCTCAATTTAAATATCTAAACAGCTCTTGTCTAAGCT
TTGAATCTCAATACAAATTTAAATACATTAAACTTCATTATAAAAGAGTC
TACATTGGCATCATGCTAATCTTATTGACAATATATAGTTGCCGGTATTA
ATTATTTTTGCACCATAGCTTCCGTAAAATCAATTGGGTACCCAGTTCCG
GATGAAGGGTTGGAACCGCCGTTGGAGCATGGACATAGGATGGAGACAAC
TCGAATGAGTAGTTTTGAAGAATCATTGCCGGGGCCATTTTTGCTTCTAC
TAGAGCAAAATTTTGTCCAACACATATCCTAGGACCCGATGCGAATGGGA
AATATGAAACTTGATTTTTTGCCGCCTTTGAAATTCCTTCCGCAAACCTT
TCCGGCTTAAACTCAACTGCATCGTCACCCCAAAGTTCAGGATCCTGGTG
AACTAGGATCATTGGCAAGCCAATTTGAACCCCAGCGGGTAATGTCAAGT
TTCCGAGTTTCGTTTCCTTAAGAACAGCTCGACTAAGCGCAGTTAAGGGC
GGATAAAGCCTGAGTACCTCGTAAAGTATCATCTGGACAATTTTGAGGTG
GTTCAATTCACCATAGTCGGGCTTATTATTGCCAAACACTTGCAAAACCT
CTTGCCTTGCACGTTCTTGCCAATCTTGATGCTTGCTCAATAAGACCATT
GTCCAATTAAGCAA
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