CB290837

Overview
NameCB290837
Unique NameCB290837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig155 contig Csv1_Contig155:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290837 vs. ExPASy Swiss-Prot
Match: GSHR_BURCE (Glutathione reductase OS=Burkholderia cepacia GN=gor PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34
Identity = 79/161 (49.07%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  199 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 681
            +DFDLFVIGAGSGGVRAAR +A  GAKV I E              GGTCVIRGCVPKK+L+Y + +G   EDA  +GW         W  L+  K  EI RL G+Y+RL+ NA V++++G  +I GPN V V     T  S SA+ ILIATG+R    P+
Sbjct:    4 YDFDLFVIGAGSGGVRAARIAAGHGAKVAIAEEY----------RFGGTCVIRGCVPKKLLMYASQYGQGFEDAAGFGWH-SAATSHSWTSLIAAKDAEIARLEGVYQRLIENANVEIFKGRAQIAGPNRVTV-----TGASVSARTILIATGARPVMPPV 148          
BLAST of CB290837 vs. ExPASy Swiss-Prot
Match: GSHR_ANASP (Glutathione reductase OS=Anabaena sp. (strain PCC 7120) GN=gor PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.585e-27
Identity = 68/155 (43.87%), Postives = 93/155 (60.00%), Query Frame = 1
Query:  199 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR 663
            FD+DLFVIGAGSGG+ A++ +A++GAKV I E             VGGTCVIRGCVPKK++VYG+ F    EDA  YGW+V  K + +W+  +     E+ RL+ ++   L  AGV+L  G   +V  + VEV +       ++A  ILIA G R
Sbjct:    3 FDYDLFVIGAGSGGLAASKRAASYGAKVAIAENDL----------VGGTCVIRGCVPKKLMVYGSHFPALFEDAAGYGWQV-GKAELNWEHFITSIDKEVRRLSQLHISFLEKAGVELISGRATLVDNHTVEVGE-----RKFTADKILIAVGGR 141          
BLAST of CB290837 vs. ExPASy Swiss-Prot
Match: TRXR1_RAT (Thioredoxin reductase 1, cytoplasmic OS=Rattus norvegicus GN=Txnrd1 PE=1 SV=4)

HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26
Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  199 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR 663
            +DFDL +IG GSGG+ AA+ +A F  KV + +    P      GG+GGTCV  GC+PKK++   A  G  L+D+R+YGW++ + +  DW+K+ +   + I  LN  Y+  L    V      GK +GP+++  T   G +  YSA+  LIATG R
Sbjct:   11 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDF-VTPTPLGTNGGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGER 164          
BLAST of CB290837 vs. ExPASy Swiss-Prot
Match: TRXR1_PONAB (Thioredoxin reductase 1, cytoplasmic OS=Pongo abelii GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 59/155 (38.06%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  199 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR 663
            +D+DL +IG GSGG+ AA+ +A +G KV + +    P       G+GGTCV  GC+PKK++   A  G  L+D+R+YGW+V E +  DW ++++   + I  LN  Y+  L    V      G+ +GP+ ++ T   G +  YSA+  LIATG R
Sbjct:   11 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF-VTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGER 164          
BLAST of CB290837 vs. ExPASy Swiss-Prot
Match: TRXR1_HUMAN (Thioredoxin reductase 1, cytoplasmic OS=Homo sapiens GN=TXNRD1 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 59/155 (38.06%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  199 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR 663
            +D+DL +IG GSGG+ AA+ +A +G KV + +    P       G+GGTCV  GC+PKK++   A  G  L+D+R+YGW+V E +  DW ++++   + I  LN  Y+  L    V      G+ +GP+ ++ T   G +  YSA+  LIATG R
Sbjct:  161 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF-VTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGER 314          
BLAST of CB290837 vs. ExPASy Swiss-Prot
Match: TRXR1_MOUSE (Thioredoxin reductase 1, cytoplasmic OS=Mus musculus GN=Txnrd1 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25
Identity = 60/155 (38.71%), Postives = 87/155 (56.13%), Query Frame = 1
Query:  199 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR 663
            +DFDL +IG GSGG+ AA+ +A F  KV + +    P       G+GGTCV  GC+PKK++   A  G  L+D+R+YGW+V + +  DW+K+ +     I  LN  Y+  L    V      G+ +GP+ +  T   G +  YSA+  LIATG R
Sbjct:  125 YDFDLIIIGGGSGGLAAAKEAAKFDKKVLVLDF-VTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGER 278          
BLAST of CB290837 vs. ExPASy Swiss-Prot
Match: GSHR_NEUCR (Glutathione reductase OS=Neurospora crassa GN=glr-1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25
Identity = 69/159 (43.40%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  208 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGG--VGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 678
            D  VIG GSGG+  AR +A    K GI         S V+ G  +GGTCV  GCVPKK+  Y A     +  A+ YG+ V +   FDW    QK+   + RLNGIY+R L+N  V+   G  K++ PN VEVT  DGTK   +AK ILIA G      P
Sbjct:    9 DFLVIGGGSGGIATARAAAG---KYGI--------KSMVVEGKRLGGTCVNVGCVPKKVTFYAALVAETIHQAKDYGFSVEQTAPFDWPTFKQKRDAYVARLNGIYERNLANDKVEYVHGWAKLLSPNSVEVTLDDGTKSVVNAKKILIAVGGNPTIPP 156          
BLAST of CB290837 vs. ExPASy Swiss-Prot
Match: TRXR1_BOVIN (Thioredoxin reductase 1, cytoplasmic OS=Bos taurus GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 59/155 (38.06%), Postives = 87/155 (56.13%), Query Frame = 1
Query:  199 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR 663
            +D+DL +IG GSGG+ AA+ +A +  KV + +    P       G+GGTCV  GC+PKK++   A  G  L D+R+YGW V E +  DW+++ +   + I  LN  Y+  L    V      G+ VGP+ ++ T   G +  YSA+  LIATG R
Sbjct:   11 YDYDLIIIGGGSGGLAAAKEAAKYDKKVMVLDF-VTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALRDSRNYGWNVEETVKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGER 164          
BLAST of CB290837 vs. ExPASy Swiss-Prot
Match: TRXR1_PIG (Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 59/155 (38.06%), Postives = 86/155 (55.48%), Query Frame = 1
Query:  199 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR 663
            +D+DL +IG GSGG+ AA+ +A F  +V + +    P       G+GGTCV   C+PKK++   A  G  L D+R+YGW V E I  DW+++ +   + I  LN  Y+  L    V      G+ VGP+ ++ T   G +  YSA+  LIATG R
Sbjct:   11 YDYDLIIIGGGSGGLAAAKEAARFNKRVMVLDF-VTPTPLGTRWGLGGTCVNVSCIPKKLMHQAALLGQALRDSRNYGWNVEETIKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGQFVGPHRIKATNNKGKEKIYSAEKFLIATGER 164          
BLAST of CB290837 vs. ExPASy Swiss-Prot
Match: GSHR_ASHGO (Glutathione reductase OS=Ashbya gossypii GN=GLR1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24
Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  187 EQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW--EVH---EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATG 657
            E  H+D+   VIG GSGGV ++R +A++GAK  + E             +GGTCV  GCVPKK++ Y +     L  AR YG   EV    EK+ F+WK+   K+   + RLNGIY+R L+  GV+   G  +     +VEVT+ D T   Y+A HILIATG
Sbjct:   18 EVKHYDY--LVIGGGSGGVASSRRAASYGAKTVLIEGK----------ALGGTCVNVGCVPKKVMWYASDLAHRLLHARDYGLLQEVDISKEKLHFNWKEFAGKRNAYVERLNGIYERNLAKEGVEYVHGWARFNSEGQVEVTRPDQTTEKYTADHILIATG 167          
The following BLAST results are available for this feature:
BLAST of CB290837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
GSHR_BURCE8.810e-3449.07Glutathione reductase OS=Burkholderia cepacia GN=g... [more]
GSHR_ANASP3.585e-2743.87Glutathione reductase OS=Anabaena sp. (strain PCC ... [more]
TRXR1_RAT1.779e-2639.35Thioredoxin reductase 1, cytoplasmic OS=Rattus nor... [more]
TRXR1_PONAB6.761e-2638.06Thioredoxin reductase 1, cytoplasmic OS=Pongo abel... [more]
TRXR1_HUMAN6.761e-2638.06Thioredoxin reductase 1, cytoplasmic OS=Homo sapie... [more]
TRXR1_MOUSE3.356e-2538.71Thioredoxin reductase 1, cytoplasmic OS=Mus muscul... [more]
GSHR_NEUCR3.356e-2543.40Glutathione reductase OS=Neurospora crassa GN=glr-... [more]
TRXR1_BOVIN7.476e-2538.06Thioredoxin reductase 1, cytoplasmic OS=Bos taurus... [more]
TRXR1_PIG2.841e-2438.06Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa... [more]
GSHR_ASHGO6.328e-2441.98Glutathione reductase OS=Ashbya gossypii GN=GLR1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dh02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dh02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290837 ID=CB290837; Name=CB290837; organism=Citrus sinensis; type=EST; length=683bp
CCATTCATAAACAAATTTTTTCGATCGTTTTTATTTCATCAATTACGACA
GCATAGTCATTAGTCATTGCTGCAGCAGCCTCTGCTTTTCTTTCAATTCC
TTAACTCATCTCTTAGTTGAATTGATTAAAGAGCGATGGCAAGGAAGATG
CTTAACGATGGCGAGCTGAGCCAGCCCAATCAAGAAGAACAAACTCATTT
TGACTTCGACTTGTTTGTTATTGGAGCTGGAAGTGGTGGTGTTCGTGCTG
CTCGATTTTCGGCTAATTTTGGAGCCAAGGTTGGGATATGCGAGCTTCCT
TTTCATCCGATCAGCTCTGAAGTAATTGGGGGAGTTGGTGGAACCTGTGT
CATTCGTGGTTGTGTACCCAAAAAGATATTGGTCTATGGAGCATCATTTG
GAGGTGAACTTGAGGATGCAAGGAGTTATGGATGGGAGGTACACGAGAAA
ATTGACTTCGACTGGAAAAAACTTCTGCAAAAGAAGACAGATGAGATACT
CAGATTAAATGGAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAAT
TATATGAAGGGGAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACA
CAACTAGATGGCACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGC
AACTGGAAGTAGGGCTCAACGTGCTCCTATTCC
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