CB290841

Overview
NameCB290841
Unique NameCB290841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: BRSK2_HUMAN (BR serine/threonine-protein kinase 2 OS=Homo sapiens GN=BRSK2 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.249e-12
Identity = 35/90 (38.89%), Postives = 60/90 (66.67%), Query Frame = 1
Query:  490 RTGGASRTR-VGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            + GGA   + VG Y L +TLG+G    VK   +  T + VAIKI+++EK L   ++ +++REI+ +KLI HP+V+++++V  +K  +Y+V
Sbjct:    6 KDGGAQHAQYVGPYRLEKTLGKGQTGLVKLGVHCVTCQKVAIKIVNREK-LSESVLMKVEREIAILKLIEHPHVLKLHDVYENKKYLYLV 94          

HSP 2 Score: 23.483 bits (49), Expect = 9.249e-12
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  752 LFLEFVTGGELFD 790
            L LE V+GGELFD
Sbjct:   93 LVLEHVSGGELFD 105          
BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: NIM1_HUMAN (Serine/threonine-protein kinase NIM1 OS=Homo sapiens GN=NIM1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  514 RVGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            R+G Y +   +G G+F++VK   ++ T E VAIKILDK K L  K    + REIS+M+ + HPN+IR+YEV+ + +K+++V
Sbjct:   70 RIGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTK-LDQKTQRLLSREISSMEKLHHPNIIRLYEVVETLSKLHLV 149          
BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: BRSK2_MOUSE (BR serine/threonine-protein kinase 2 OS=Mus musculus GN=Brsk2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 1.201e-11
Identity = 35/88 (39.77%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  496 GGASRTR-VGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            GGA   + VG Y L +TLG+G    VK   +  T + VAIKI+++EK L   ++ +++REI+ +KLI HP+V+++++V  +K  +Y+V
Sbjct:    9 GGAQHAQYVGPYRLEKTLGKGQTGLVKLGIHCVTCQKVAIKIVNREK-LSESVLMKVEREIAILKLIEHPHVLKLHDVYENKKYLYLV 95          

HSP 2 Score: 23.483 bits (49), Expect = 1.201e-11
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  752 LFLEFVTGGELFD 790
            L LE V+GGELFD
Sbjct:   94 LVLEHVSGGELFD 106          
BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: NIM1_MOUSE (Serine/threonine-protein kinase NIM1 OS=Mus musculus GN=Nim1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 35/81 (43.21%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  514 RVGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            R+G Y +   +G G+F++VK   ++ T E VAIKILDK K L  K    + REIS+M+ + HPN++R+YEV+ + +K+++V
Sbjct:   70 RIGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTK-LDQKTQRLLSREISSMEKLHHPNIVRLYEVVETLSKLHLV 149          
BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: MRKC_DICDI (Probable serine/threonine-protein kinase MARK-C OS=Dictyostelium discoideum GN=mrkC PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.557e-11
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  517 VGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVM 729
            VG YE+G+TLG G+F KVK   N  T ENVAIK +   K L  K      REI  MKL+ HPN++++ +V+
Sbjct:   43 VGSYEVGKTLGNGTFGKVKLGTNICTKENVAIKFIKNNK-LSGKQKETCFREIDIMKLLDHPNIVKLLDVV 112          

HSP 2 Score: 24.2534 bits (51), Expect = 1.557e-11
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  752 LFLEFVTGGELFD 790
            L +E+V+GGELFD
Sbjct:  123 LIVEYVSGGELFD 135          
BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: MELK_MOUSE (Maternal embryonic leucine zipper kinase OS=Mus musculus GN=Melk PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  526 YELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVFGIC 768
            YEL  T+G G FAKVK A +  TGE VAIKI+DK  +     + ++K EI  +K +RH ++ ++Y V+ +K KI++V   C
Sbjct:   11 YELYETIGTGGFAKVKLACHVLTGEMVAIKIMDKNAL--GSDLPRVKTEIDALKSLRHQHICQLYHVLETKNKIFMVLEYC 89          
BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: GIN4_YEAST (Serine/threonine-protein kinase GIN4 OS=Saccharomyces cerevisiae GN=GIN4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  517 VGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKE-----KVLKHKMIGQ---------IKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            +G ++LG TLG GS  KV+ ARN  TG+  A+K++ K       V    ++G          I+REI  MKL+ HPNV+R+Y+V  + T +Y+V
Sbjct:   16 IGPWKLGETLGLGSTGKVQLARNGSTGQEAAVKVISKAVFNTGNVSGTSIVGSTTPDALPYGIEREIIIMKLLNHPNVLRLYDVWETNTDLYLV 109          
The following BLAST results are available for this feature:
BLAST of CB290841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
BRSK2_HUMAN9.249e-1238.89BR serine/threonine-protein kinase 2 OS=Homo sapie... [more]
NIM1_HUMAN9.343e-1244.44Serine/threonine-protein kinase NIM1 OS=Homo sapie... [more]
BRSK2_MOUSE1.201e-1139.77BR serine/threonine-protein kinase 2 OS=Mus muscul... [more]
NIM1_MOUSE1.220e-1143.21Serine/threonine-protein kinase NIM1 OS=Mus muscul... [more]
MRKC_DICDI1.557e-1147.89Probable serine/threonine-protein kinase MARK-C OS... [more]
MELK_MOUSE3.550e-1143.21Maternal embryonic leucine zipper kinase OS=Mus mu... [more]
GIN4_YEAST3.550e-1139.36Serine/threonine-protein kinase GIN4 OS=Saccharomy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01dh04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dh04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290841 ID=CB290841; Name=CB290841; organism=Citrus sinensis; type=EST; length=791bp
GCACTAGGCTACGATCCAGCTCCCAAAATTTCTTCGCAAGAATCTCCTCA
ATAATTCACGTAGATGTACGTCTCTGATTTATCTTCTCAGTGCAAGCCCC
TTTATAGATCCGTGCGCTAATTAATTATTATGATTATTATTTCTTTATTC
GACTGAAATTTGCGAGTAAATACTTCGATTTTGCCAAAATCATAATTTAC
ATCCTTTCTCGGCTGATTCACTCGATTCCATGGGGTCCATGTCTGATCTG
TCGGTCACAATCTCTCATCGATTCGTCCTGAATTGTCGAGAAGCAAAGAT
GAGGGTAGAGAAGTCGCAGGTATGGCAGCCGTGCAAAAAGAAGAGGTCTT
GATCGTTAGTAAATAATCTCCAAAGCGAGAGAGAAAAAATCGAAAATAAG
AAGAGATTTTTAAATTATATTGAGGAAGGGAAGGGAACGAAAACTGAATC
TTAGGTTGAGCGAAGATTGAAGGGAAGGACATGGCTTCTCGCACAGGCGG
AGCAAGCAGGACACGTGTTGGGAAGTACGAGTTAGGAAGGACGCTCGGAG
AAGGAAGCTTCGCCAAAGTGAAGTTTGCTAGAAACACTGAAACTGGAGAA
AATGTCGCCATTAAAATTCTCGATAAAGAAAAGGTTCTCAAGCATAAGAT
GATCGGTCAGATTAAGCGTGAAATTTCAACCATGAAACTTATTAGACACC
CTAATGTCATCCGCATGTATGAGGTGATGGCAAGCAAGACAAAAATATAC
ATTGTTTTTGGAATTTGTGACTGGTGGTGAACTTTTTGACA
back to top