CB290841 | Citrus Genome Database

Overview


Name	CB290841
Unique Name	CB290841
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	791

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: MARK1_HUMAN (Serine/threonine-protein kinase MARK1 OS=Homo sapiens GN=MARK1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.446e-14
Identity = 33/80 (41.25%), Postives = 58/80 (72.50%), Query Frame = 1

Query:  517 VGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            +G Y L +T+G+G+FAKVK AR+  TG  VA+KI+DK + L    + ++ RE+  MK++ HPN+++++EV+ ++  +Y+V
Sbjct:   57 IGNYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQ-LNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLV 135

HSP 2 Score: 21.557 bits (44), Expect = 6.446e-14
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2

Query:  752 LFLEFVTGGELFD 790
            L +E+ +GGE+FD
Sbjct:  134 LVMEYASGGEVFD 146

[Close]

BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: MARK1_RAT (Serine/threonine-protein kinase MARK1 OS=Rattus norvegicus GN=Mark1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.446e-14
Identity = 33/80 (41.25%), Postives = 58/80 (72.50%), Query Frame = 1

Query:  517 VGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            +G Y L +T+G+G+FAKVK AR+  TG  VA+KI+DK + L    + ++ RE+  MK++ HPN+++++EV+ ++  +Y+V
Sbjct:   57 IGNYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQ-LNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLV 135

HSP 2 Score: 21.557 bits (44), Expect = 6.446e-14
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2

Query:  752 LFLEFVTGGELFD 790
            L +E+ +GGE+FD
Sbjct:  134 LVMEYASGGEVFD 146

[Close]

BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: MARK3_RAT (MAP/microtubule affinity-regulating kinase 3 OS=Rattus norvegicus GN=Mark3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.088e-13
Identity = 33/80 (41.25%), Postives = 58/80 (72.50%), Query Frame = 1

Query:  517 VGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            +G Y L +T+G+G+FAKVK AR+  TG  VAIKI+DK + L    + ++ RE+  MK++ HPN+++++EV+ ++  +Y++
Sbjct:   53 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQ-LNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 131

HSP 2 Score: 21.9422 bits (45), Expect = 1.088e-13
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2

Query:  752 LFLEFVTGGELFD 790
            L +E+ +GGE+FD
Sbjct:  130 LIMEYASGGEVFD 142

[Close]

BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: MARK3_HUMAN (MAP/microtubule affinity-regulating kinase 3 OS=Homo sapiens GN=MARK3 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.088e-13
Identity = 33/80 (41.25%), Postives = 58/80 (72.50%), Query Frame = 1

Query:  517 VGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            +G Y L +T+G+G+FAKVK AR+  TG  VAIKI+DK + L    + ++ RE+  MK++ HPN+++++EV+ ++  +Y++
Sbjct:   53 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQ-LNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 131

HSP 2 Score: 21.9422 bits (45), Expect = 1.088e-13
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2

Query:  752 LFLEFVTGGELFD 790
            L +E+ +GGE+FD
Sbjct:  130 LIMEYASGGEVFD 142

[Close]

BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: MARK3_MOUSE (MAP/microtubule affinity-regulating kinase 3 OS=Mus musculus GN=Mark3 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.089e-13
Identity = 33/80 (41.25%), Postives = 58/80 (72.50%), Query Frame = 1

Query:  517 VGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            +G Y L +T+G+G+FAKVK AR+  TG  VAIKI+DK + L    + ++ RE+  MK++ HPN+++++EV+ ++  +Y++
Sbjct:   53 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQ-LNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 131

HSP 2 Score: 21.9422 bits (45), Expect = 1.089e-13
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2

Query:  752 LFLEFVTGGELFD 790
            L +E+ +GGE+FD
Sbjct:  130 LIMEYASGGEVFD 142

[Close]

BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: AAPK2_CAEEL (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Caenorhabditis elegans GN=aak-2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.421e-13
Identity = 32/84 (38.10%), Postives = 59/84 (70.24%), Query Frame = 1

Query:  505 SRTRVGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            ++ ++G Y L  TLG G+F KVK   +  T   VA+KIL+++K+    ++G+I+REI  + L RHP++IR+Y+V+++ + I+++
Sbjct:   80 AQIKIGHYILKETLGVGTFGKVKVGIHETTQYKVAVKILNRQKIKSLDVVGKIRREIQNLSLFRHPHIIRLYQVISTPSDIFMI 163

HSP 2 Score: 22.3274 bits (46), Expect = 1.421e-13
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2

Query:  752 LFLEFVTGGELFD 790
            + +E V+GGELFD
Sbjct:  162 MIMEHVSGGELFD 174

[Close]

BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: SNF1_SCHPO (SNF1-like protein kinase ssp2 OS=Schizosaccharomyces pombe GN=ssp2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 35/84 (41.67%), Postives = 59/84 (70.24%), Query Frame = 1

Query:  505 SRTRVGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            S+  +G Y +  TLGEGSF KVK A + +T + VA+K + ++ + K  M  +++REIS +KL+RHP++I++Y+V+ + T I +V
Sbjct:   27 SKRHIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 110

[Close]

BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: MARK4_MOUSE (MAP/microtubule affinity-regulating kinase 4 OS=Mus musculus GN=Mark4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.793e-13
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 1

Query:  517 VGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            VG Y L RT+G+G+FAKVK AR+  TG  VAIKI+DK + L    + ++ RE+  MK + HPN+++++EV+ ++  +Y+V
Sbjct:   56 VGNYRLLRTIGKGNFAKVKLARHILTGREVAIKIIDKTQ-LNPSSLQKLFREVRIMKGLNHPNIVKLFEVIETEKTLYLV 134

[Close]

BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: MARK4_HUMAN (MAP/microtubule affinity-regulating kinase 4 OS=Homo sapiens GN=MARK4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.793e-13
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 1

Query:  517 VGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            VG Y L RT+G+G+FAKVK AR+  TG  VAIKI+DK + L    + ++ RE+  MK + HPN+++++EV+ ++  +Y+V
Sbjct:   56 VGNYRLLRTIGKGNFAKVKLARHILTGREVAIKIIDKTQ-LNPSSLQKLFREVRIMKGLNHPNIVKLFEVIETEKTLYLV 134

[Close]

BLAST of CB290841 vs. ExPASy Swiss-Prot
Match: SIK3_MOUSE (Serine/threonine-protein kinase SIK3 OS=Mus musculus GN=Sik3 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 3.971e-13
Identity = 37/81 (45.68%), Postives = 58/81 (71.60%), Query Frame = 1

Query:  514 RVGKYELGRTLGEGSFAKVKFARNTETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIV 756
            R+G YE+ RT+G+G+FA VK A +  T   VAIKI+DK + L  + + +I RE+  MK++ HP++IR+Y+VM ++  IY+V
Sbjct:    4 RIGYYEIDRTIGKGNFAVVKRATHLVTKAKVAIKIIDKSQ-LDEENLKKIFREVQIMKMLCHPHIIRLYQVMETERMIYLV 83

HSP 2 Score: 20.7866 bits (42), Expect = 3.971e-13
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 2

Query:  752 LFLEFVTGGELFD 790
            L  E+ +GGE+FD
Sbjct:   82 LVTEYASGGEIFD 94

The following BLAST results are available for this feature:

BLAST of CB290841 vs. ExPASy Swiss-Prot

BLAST of CB290841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117


Match Name	E-value	Identity	Description
MARK1_HUMAN	6.446e-14	41.25	Serine/threonine-protein kinase MARK1 OS=Homo sapi...	[more]
MARK1_RAT	6.446e-14	41.25	Serine/threonine-protein kinase MARK1 OS=Rattus no...	[more]
MARK3_RAT	1.088e-13	41.25	MAP/microtubule affinity-regulating kinase 3 OS=Ra...	[more]
MARK3_HUMAN	1.088e-13	41.25	MAP/microtubule affinity-regulating kinase 3 OS=Ho...	[more]
MARK3_MOUSE	1.089e-13	41.25	MAP/microtubule affinity-regulating kinase 3 OS=Mu...	[more]
AAPK2_CAEEL	1.421e-13	38.10	5'-AMP-activated protein kinase catalytic subunit ...	[more]
SNF1_SCHPO	1.703e-13	41.67	SNF1-like protein kinase ssp2 OS=Schizosaccharomyc...	[more]
MARK4_MOUSE	3.793e-13	45.00	MAP/microtubule affinity-regulating kinase 4 OS=Mu...	[more]
MARK4_HUMAN	3.793e-13	45.00	MAP/microtubule affinity-regulating kinase 4 OS=Ho...	[more]
SIK3_MOUSE	3.971e-13	45.68	Serine/threonine-protein kinase SIK3 OS=Mus muscul...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS01_01dh04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dh04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB290841 ID=CB290841; Name=CB290841; organism=Citrus sinensis; type=EST; length=791bp
GCACTAGGCTACGATCCAGCTCCCAAAATTTCTTCGCAAGAATCTCCTCA
ATAATTCACGTAGATGTACGTCTCTGATTTATCTTCTCAGTGCAAGCCCC
TTTATAGATCCGTGCGCTAATTAATTATTATGATTATTATTTCTTTATTC
GACTGAAATTTGCGAGTAAATACTTCGATTTTGCCAAAATCATAATTTAC
ATCCTTTCTCGGCTGATTCACTCGATTCCATGGGGTCCATGTCTGATCTG
TCGGTCACAATCTCTCATCGATTCGTCCTGAATTGTCGAGAAGCAAAGAT
GAGGGTAGAGAAGTCGCAGGTATGGCAGCCGTGCAAAAAGAAGAGGTCTT
GATCGTTAGTAAATAATCTCCAAAGCGAGAGAGAAAAAATCGAAAATAAG
AAGAGATTTTTAAATTATATTGAGGAAGGGAAGGGAACGAAAACTGAATC
TTAGGTTGAGCGAAGATTGAAGGGAAGGACATGGCTTCTCGCACAGGCGG
AGCAAGCAGGACACGTGTTGGGAAGTACGAGTTAGGAAGGACGCTCGGAG
AAGGAAGCTTCGCCAAAGTGAAGTTTGCTAGAAACACTGAAACTGGAGAA
AATGTCGCCATTAAAATTCTCGATAAAGAAAAGGTTCTCAAGCATAAGAT
GATCGGTCAGATTAAGCGTGAAATTTCAACCATGAAACTTATTAGACACC
CTAATGTCATCCGCATGTATGAGGTGATGGCAAGCAAGACAAAAATATAC
ATTGTTTTTGGAATTTGTGACTGGTGGTGAACTTTTTGACA