CB290849

Overview
NameCB290849
Unique NameCB290849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: KATG_RHOPS (Catalase-peroxidase OS=Rhodopseudomonas palustris (strain BisB5) GN=katG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 56/179 (31.28%), Postives = 76/179 (42.46%), Query Frame = 2
Query:  320 ILVRLGWHDAGTYDKNIEEWPRRGGANA-SLRFEVELKHAANAGLVNALKLIQPIKDKYSG-VTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQC---PE-------------------------------EGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVAL-SGAHTVGRS 745
            +++R+ WH AGTY         RGGA A   RF        NA L  A +L+ PIK KY   +++ADL+ L    A+E  G        GR D   PE+    PE                               EG      P + A+ +R  F RM +ND+E VAL +G HT G++
Sbjct:   91 LMIRMAWHSAGTY----RTTDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLYVLTGNVALESMGFKTFGFAGGRADTWEPEELFWGPEGSWLGDERYSGERQLHDALGAVQMGLIYVNPEGPNGNPDPVAAAKDIRETFARMAMNDEETVALIAGGHTFGKT 265          
BLAST of CB290849 vs. ExPASy Swiss-Prot
Match: KATG_RHILO (Catalase-peroxidase OS=Rhizobium loti GN=katG PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 64/201 (31.84%), Postives = 85/201 (42.29%), Query Frame = 2
Query:  263 LKSAREDIRELLKSTFCH--PILVRLGWHDAGTYDKNIEEWPRRGGANA-SLRFEVELKHAANAGLVNALKLIQPIKDKYS-GVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQ----CPE-------------------------------EGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVAL-SGAHTVGRS 745
            L +   D +E   + F H  P+ +R+ WH AGTY   I +   RGGA A   RF        N  L  A +L+ PIK KY   +++ADL  L    A+E  G        GR DV  PEQ     PE                               EG      P + A  +R+ F RM +ND+E VAL +G HT G++
Sbjct:   69 LHALMTDSQEWWPADFGHYGPLFIRMAWHSAGTY--RIAD--GRGGAGAGQQRFAPLNSWPDNVNLDKARRLLWPIKQKYGRKISWADLLILTGNVALESMGFKTFGFAGGRADVWEPEQDVYWGPEGKWLADERYSGDRDLQNPLGAVQMGLIYVNPEGPNGNPDPLAAARDIRDTFARMAMNDEETVALIAGGHTFGKT 265          
The following BLAST results are available for this feature:
BLAST of CB290849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
KATG_RHOPS9.911e-1131.28Catalase-peroxidase OS=Rhodopseudomonas palustris ... [more]
KATG_RHILO9.911e-1131.84Catalase-peroxidase OS=Rhizobium loti GN=katG PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dh08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dh08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290849 ID=CB290849; Name=CB290849; organism=Citrus sinensis; type=EST; length=774bp
GCTGCAATCAAAATCACAATCACCGATGGCTTCCTCTTTGAGCACCGCCG
CTTCTTCTCGCCTTCTTTGCTCCACCACCGCCGCCGCCGCAGCTGCTAAG
CTTTCTTTCTCTTCCGCTTCTTCACTCTCTTTCTCTCTCTCCTCTTCTTC
CTCCCTCAAATGCCTCAGATTCTCTCCTCTCATCAGCCAGAGGAGATCGT
CTGTGAACAGAGGATATAGCACCGTACCTACGACGAAATGTGCGGCGTCG
GATCCTGATCAGTTGAAGAGTGCTAGAGAAGATATTAGGGAGCTTCTCAA
GTCTACATTTTGCCATCCTATTTTGGTTCGTCTAGGATGGCATGATGCTG
GTACTTATGACAAGAACATTGAGGAGTGGCCTCGAAGGGGAGGAGCTAAT
GCAAGTCTTAGATTTGAGGTTGAGCTAAAACACGCAGCCAATGCTGGGCT
TGTGAATGCATTGAAACTGATTCAACCTATCAAGGACAAATATTCCGGTG
TCACATATGCAGACTTATTCCAGTTGGCTAGCGCTACTGCTATAGAGGAA
GCCGGGGGTCCTAAGATCCCAATGAAGTATGGAAGAGTGGATGTCTCAGG
ACCTGAGCAGTGCCCTGAAGAAGGAAGGCTTCCTGCTGCTGGGCCTCCAT
CACCTGCTGAACATTTAAGAAATGTCTTTTATAGAATGGGATTAAATGAC
AAGGAAATAGTTGCCTTATCTGGTGCACACACAGTGGGAAGGTCTAGACC
TGAACGAAGTGGTTGGGGCAAGCC
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