CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_ASHGO (ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.681e-37
Identity = 85/175 (48.57%), Postives = 116/175 (66.29%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            ++P  S  +FE+L L+PELLKGLY  MKFQKPSKIQ  +LP++L  P RN+IAQ+++G+GKT  F L MLSRVD  + A QA+C+ P+R LA Q LEV+++MGK T I S+  VP          K   + A +++GTPGT+   M  K +   ++K  V DEAD+MLD+ G  D
Sbjct:   72 NSPLYSVKSFEELGLAPELLKGLYA-MKFQKPSKIQERALPLLLYNPPRNMIAQSQSGTGKTAAFSLTMLSRVDVAVPATQAICLAPSR-LARQTLEVIQEMGKFTKIASQLIVPDS------YEKNKAINAHIIVGTPGTVLDLMRRKMIQLGKVKTFVLDEADNMLDKQGLGD 238          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_YARLI (ATP-dependent RNA helicase DBP5 OS=Yarrowia lipolytica GN=DBP5 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.019e-36
Identity = 92/237 (38.82%), Postives = 134/237 (56.54%), Query Frame = 1
Query:   97 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGD-----------------------TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA 738
            A   E K   + DV+    ++ KKV K  D+ ED+  ++    +                       +P  SA  FEDL L   LLKGLY  MKF KPSKIQ  +LP++L+ P  N+I Q+++G+GKT  F L MLSRVDPNLKA Q +C+ P+RELA Q L+V+ +M K T IT+   VP  +       +   VT+Q+++GTPG++   +  K++    +K+ V DEAD+M+D +
Sbjct:   26 AKVEEVKEDDKKDVKEELNEDDKKVAKEDDKKEDAKEESKEDAEENNLIQTEYEVRVKLADLQADPNSPLYSAKRFEDLGLDENLLKGLYA-MKFNKPSKIQEKALPLLLSDPPHNMIGQSQSGTGKTGAFSLTMLSRVDPNLKAVQCICLAPSRELARQTLDVVDEMKKFTDITTHLIVPEST------ERGQKVTSQILVGTPGSVAGLLQKKQIDAKHVKVFVLDEADNMVDSS 255          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_PICGU (ATP-dependent RNA helicase DBP5 OS=Pichia guilliermondii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.738e-36
Identity = 82/172 (47.67%), Postives = 112/172 (65.12%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAG 741
            ++P  S  +FE+L LSPELLKGLY  MKF KPSKIQ  +LP++++ P +N+I Q+++G+GKT  F L MLSRVD N    Q +C+ PTRELA Q LEV+  MGK T +T++  VP        + K     A +V+GTPGT+   +  K L   ++K+ V DEAD+MLD  G
Sbjct:   85 NSPLYSVKSFEELGLSPELLKGLYA-MKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDVNDPNTQCICLSPTRELARQTLEVITTMGKFTKVTTQLVVPQ------AMEKNQGTQAHIVVGTPGTLLDMIKRKLLRTGKVKVFVLDEADNMLDGQG 249          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_DEBHA (ATP-dependent RNA helicase DBP5 OS=Debaryomyces hansenii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.775e-34
Identity = 88/222 (39.64%), Postives = 129/222 (58.11%), Query Frame = 1
Query:   97 ANTSEDKSTAELDVEGLTIDESKKV-NKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            A+T E K     DV+  T  E ++  +  +  + +  +K        ++P  S  +FE+L LS ELLKGLY  MKF KPSKIQ  +LP++++ P +N+I Q+++G+GKT  F L MLSRVD +    Q +C+ P RELA Q LEV+  M K T ITS+  VP        + +     A V++GTPGT+   +  K +  S++K+ V DEAD+ML+  G  D
Sbjct:   52 ASTEESKPA---DVKDATKSEEQEAESNLIKSSYEVKVKLADLQADPNSPLYSVKSFEELGLSSELLKGLYA-MKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDESDPNTQCICLAPARELARQTLEVITTMSKFTKITSQLIVPD------AMQRGQSTCAHVLVGTPGTLLDLIRRKLINTSKVKVFVLDEADNMLESQGLGD 263          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX19_DICDI (ATP-dependent RNA helicase ddx19 OS=Dictyostelium discoideum GN=helC PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.377e-33
Identity = 82/173 (47.40%), Postives = 113/173 (65.32%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI-----TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            ++P  S  TFE+L L PELLKG+Y  M + KPSKIQ  +LP+I+  P  NLIAQ+++G+GKT  F LGML+ VDP++ APQA+CI PT+ELA+Q  EV+ K+G+ + I      SE  VP + TN            QV+IGTPG I + +  K+L    LK++V DEAD ++
Sbjct:   63 NSPLYSVKTFEELGLKPELLKGVYA-MGYNKPSKIQEAALPIIIQSP-NNLIAQSQSGTGKTAAFTLGMLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNIKPLLYISEIEVPKNVTN------------QVIIGTPGKILENVIKKQLSVKFLKMVVLDEADFIV 221          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_USTMA (ATP-dependent RNA helicase DBP5 OS=Ustilago maydis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.377e-33
Identity = 74/170 (43.53%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 735
            ++P  SA +FE L L   LLKG+Y  MK+QKPSKIQ  +LP++L  P +N+I Q+++G+GKT  F+L MLSR+D +L+ PQA+ + P+RELA Q ++V R M K T +T+   +P +      + +   +TAQ++IGTPG     + +K +  + +K+ V DEAD+MLD+
Sbjct:   57 NSPLYSAKSFEALGLHENLLKGIYA-MKYQKPSKIQEKALPLLLQNPPKNMIGQSQSGTGKTAAFILTMLSRIDYDLQKPQAIALAPSRELARQIMDVARTMSKFTNVTTCLCLPDE------VKRGEKITAQLIIGTPGKTFDMIKSKGIDTAAIKVFVLDEADNMLDQ 219          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX25_MOUSE (ATP-dependent RNA helicase DDX25 OS=Mus musculus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.068e-33
Identity = 89/218 (40.83%), Postives = 124/218 (56.88%), Query Frame = 1
Query:  106 SEDKSTAELDVEGLTIDE--SKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRD 750
            +ED    E DV  L  +   +K + + L E+            +P  S  TFE+L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+     PQ LC+ PT ELA+Q   V+ +MGK   +  E            I +   VT Q++IGTPGT+  W   +KL   +++++ V DEAD M+D  GF D
Sbjct:   49 TEDDDDDEDDVVDLAANSLLNKLIRQSLIESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVERMGKFC-VDVEVMYAIRGNR---IPRGTEVTKQIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSD 261          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX25_BOVIN (ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=DDX25 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.006e-33
Identity = 81/175 (46.29%), Postives = 110/175 (62.86%), Query Frame = 1
Query:  229 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRD 750
            +P  S  TFE+L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+     PQ LC+ PT ELA+Q   V+ +MGK         +     N +P  +   VT Q+VIGTPGT+  W   +KL   +++++ V DEAD M+D  GF D
Sbjct:   91 SPLYSVKTFEELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQCLCLAPTYELALQTGRVVERMGKF--CVDVQVMYAIRGNRIP--RGTDVTKQIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFED 260          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX25_RAT (ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.233e-33
Identity = 91/220 (41.36%), Postives = 125/220 (56.82%), Query Frame = 1
Query:  100 NTSEDKSTAELDVEGLTIDE--SKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRD 750
            NT ED    E DV  L  +   +K + + L E+            +P  S  TFE+L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL ML+RV+     PQ LC+ PT ELA+Q   V+ +MGK   +  E            I +   VT Q+VIGTPGT+  W   +KL   +++++ V DEAD M+D  GF D
Sbjct:   48 NTEEDDD--EDDVVDLAANSLLNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLNRVNALELFPQCLCLAPTYELALQTGRVVERMGKFC-VDVEVMYAIRGNR---IPRGTDVTKQIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSD 260          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX25_HUMAN (ATP-dependent RNA helicase DDX25 OS=Homo sapiens GN=DDX25 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.597e-32
Identity = 84/218 (38.53%), Postives = 124/218 (56.88%), Query Frame = 1
Query:  100 NTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            N  +++   +L    L    +K +++ L E+            +P  S  TFE+L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+     PQ LC+ PT ELA+Q   V+ +MGK         +     N +P  +   +T Q++IGTPGT+  W    K +  +++++ V DEAD M+D  GF D
Sbjct:   51 NEDDEEDVVDLAANSLL---NKLIHQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVEQMGKF--CVDVQVMYAIRGNRIP--RGTDITKQIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSD 260          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP5_ASHGO2.681e-3748.57ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii... [more]
DBP5_YARLI1.019e-3638.82ATP-dependent RNA helicase DBP5 OS=Yarrowia lipoly... [more]
DBP5_PICGU1.738e-3647.67ATP-dependent RNA helicase DBP5 OS=Pichia guillier... [more]
DBP5_DEBHA2.775e-3439.64ATP-dependent RNA helicase DBP5 OS=Debaryomyces ha... [more]
DDX19_DICDI1.377e-3347.40ATP-dependent RNA helicase ddx19 OS=Dictyostelium ... [more]
DBP5_USTMA1.377e-3343.53ATP-dependent RNA helicase DBP5 OS=Ustilago maydis... [more]
DDX25_MOUSE3.068e-3340.83ATP-dependent RNA helicase DDX25 OS=Mus musculus G... [more]
DDX25_BOVIN4.006e-3346.29ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=... [more]
DDX25_RAT5.233e-3341.36ATP-dependent RNA helicase DDX25 OS=Rattus norvegi... [more]
DDX25_HUMAN2.597e-3238.53ATP-dependent RNA helicase DDX25 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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