CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  214 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 735
            + T D   T    FED  L  ELL G++ EM ++KPS IQ  S+P+ L+   R+++A+A+NG+GK+  +++ +L R+D      QA+ I PTRELA+Q  ++  ++ KH G  ++    T  TN      R   T  VVI TPG I   +         ++++V DEAD +L +
Sbjct:   85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 254          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  214 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 735
            + T D   T    FED  L  ELL G++ EM ++KPS IQ  S+P+ L+   R+++A+A+NG+GK+  +++ +L R+D      QA+ I PTRELA+Q  ++  ++ KH G  ++    T  TN      R   T  VVI TPG I   +         ++++V DEAD +L +
Sbjct:   85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQ 254          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20
Identity = 68/205 (33.17%), Postives = 114/205 (55.61%), Query Frame = 1
Query:  136 VEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            V G+T   S+K  + L E + + ++  T+ +   T   TF+ + L  +LL+G+Y    F+KPS IQ  ++  I+    R++IAQ+++G+GKT  F + +L  +D  ++  QAL + PTRELA Q  +VL  +G +  +  +C      TN     ++      VV GTPG +   +  + L    +K+LV DEAD ML++ GF++
Sbjct:    9 VAGVTSGSSRK--RLLREEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKE 203          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20
Identity = 66/189 (34.92%), Postives = 101/189 (53.44%), Query Frame = 1
Query:  184 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            D   D  I+  T+ +   T A TF+D++L   LL+G+Y    F+ PS IQ+ ++  I     R+ IAQA++G+GKT  F + +L  +D  L+  QAL + PTRELA Q   V+  +G +  +  +C      TN     ++      VV GTPG +   +  + L    +K+LV DEAD +L   GFR+
Sbjct:    6 DRTADERIEFTTSKEV--TVAPTFDDMHLKENLLRGIYA-YGFESPSAIQSRAIVQICKG--RDTIAQAQSGTGKTATFAISILQVIDTALRETQALVLSPTRELATQIQNVIMAVGDYMNV--QCHACIGGTNVGDDIRKLDHGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLL-ARGFRE 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20
Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  214 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 735
            + T D   T    FED  L  ELL G++ EM ++KPS IQ  S+P+ L+   R+++A+A+NG+GK+  +++ +L R+D      QA+ I PTRELA+Q  ++  ++ KH G  ++    T  TN      R   T  VVI TPG I   +         ++++V DEAD +L +
Sbjct:   85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRGDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 254          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK---ILVYDEADHML 729
            T D   T    FED  L  ELL G+Y E  F++PS IQ  S+P+ LT    +++A+A+NG+GKT  F +  L ++D    A Q + + PTRELA+Q  +V +++GKH  I  +  V T  T+      R      +++GTPG I   +   K G   LK   +L+ DEAD +L
Sbjct:  125 TEDVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRI---LDLTKKGICILKDCSMLIMDEADKLL 289          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 66/173 (38.15%), Postives = 96/173 (55.49%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK---ILVYDEADHML 729
            T D   T    FED  L  +LL+G+Y E  F+KPS IQ  S+P+ LT    +++A+A+NG+GKT  F +  L ++DP     QA+ + PTRELA+Q  +V +++ K+  I  E  V T  T+      R      +++GTPG I   +   K G   LK   +LV DEAD +L
Sbjct:  145 TEDVTATKGNEFEDYFLKRDLLRGIY-EKGFEKPSPIQEESIPIALTGS--DILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKI--EVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRI---LDLAKKGVCVLKDCAMLVMDEADKLL 309          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 60/168 (35.71%), Postives = 97/168 (57.74%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + +D+NLS  LL+G+Y    F+KPS IQ  ++   +     ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +   ++ + L    +K+ V DEAD ML   GF+D
Sbjct:   33 SLDDMNLSESLLRGIYA-YGFEKPSAIQQRAILSCIKG--YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD 194          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 68/211 (32.23%), Postives = 117/211 (55.45%), Query Frame = 1
Query:  118 STAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + A   V GLT   +K++   L E + ++++  T+ +   T   TF+ + L  +LL+G+Y    F+KPS IQ  ++  I+    R++IAQ+++G+GKT  F + +L  +D  ++  QAL + PT+ELA Q  +VL  +G +  +  +C      TN     ++      VV GTPG +   +  + L    +K+LV DEAD ML++ GF++
Sbjct:    3 AAAVAGVAGLTTAHAKRL---LREEDMTTVEFQTSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQKAIKQIIKG--RDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKELARQIQKVLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKE 202          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 69/211 (32.70%), Postives = 115/211 (54.50%), Query Frame = 1
Query:  118 STAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + A   V GLT    +K  + L E + + ++  T+ +   T   TF+ + L  +LL+G+Y    F+KPS IQ  ++  I+    R++IAQ+++G+GKT  F + +L  +D  ++  QAL + PTRELA Q  +VL  +G +  +  +C      TN     ++      VV GTPG +   +  + L    +K+LV DEAD ML++ GF++
Sbjct:    3 AAAVAGVAGLTSGAGRK--RLLREEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKE 203          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX6_HUMAN5.080e-2035.63Probable ATP-dependent RNA helicase DDX6 OS=Homo s... [more]
DDX6_CHICK5.080e-2035.63Probable ATP-dependent RNA helicase DDX6 OS=Gallus... [more]
IF4A3_XENTR6.635e-2033.17Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
FAL1_COCIM6.635e-2034.92ATP-dependent RNA helicase FAL1 OS=Coccidioides im... [more]
DDX6_PONAB6.635e-2035.63Probable ATP-dependent RNA helicase DDX6 OS=Pongo ... [more]
RH8_ORYSJ8.665e-2037.57DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
RH6_ARATH8.665e-2038.15DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
IF4A1_PONAB8.665e-2035.71Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
I4A3B_XENLA8.665e-2032.23Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
I4A3A_XENLA8.665e-2032.70Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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