CB290926
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20 Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 1 Query: 214 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 735 + T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G ++ T TN R T VVI TPG I + ++++V DEAD +L + Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 254
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20 Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 1 Query: 214 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 735 + T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G ++ T TN R T VVI TPG I + ++++V DEAD +L + Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQ 254
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20 Identity = 68/205 (33.17%), Postives = 114/205 (55.61%), Query Frame = 1 Query: 136 VEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 V G+T S+K + L E + + ++ T+ + T TF+ + L +LL+G+Y F+KPS IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA Q +VL +G + + +C TN ++ VV GTPG + + + L +K+LV DEAD ML++ GF++ Sbjct: 9 VAGVTSGSSRK--RLLREEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKE 203
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20 Identity = 66/189 (34.92%), Postives = 101/189 (53.44%), Query Frame = 1 Query: 184 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 D D I+ T+ + T A TF+D++L LL+G+Y F+ PS IQ+ ++ I R+ IAQA++G+GKT F + +L +D L+ QAL + PTRELA Q V+ +G + + +C TN ++ VV GTPG + + + L +K+LV DEAD +L GFR+ Sbjct: 6 DRTADERIEFTTSKEV--TVAPTFDDMHLKENLLRGIYA-YGFESPSAIQSRAIVQICKG--RDTIAQAQSGTGKTATFAISILQVIDTALRETQALVLSPTRELATQIQNVIMAVGDYMNV--QCHACIGGTNVGDDIRKLDHGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLL-ARGFRE 186
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20 Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 1 Query: 214 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 735 + T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G ++ T TN R T VVI TPG I + ++++V DEAD +L + Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMATTGGTNLRGDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 254
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20 Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 1 Query: 220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK---ILVYDEADHML 729 T D T FED L ELL G+Y E F++PS IQ S+P+ LT +++A+A+NG+GKT F + L ++D A Q + + PTRELA+Q +V +++GKH I + V T T+ R +++GTPG I + K G LK +L+ DEAD +L Sbjct: 125 TEDVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRI---LDLTKKGICILKDCSMLIMDEADKLL 289
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20 Identity = 66/173 (38.15%), Postives = 96/173 (55.49%), Query Frame = 1 Query: 220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK---ILVYDEADHML 729 T D T FED L +LL+G+Y E F+KPS IQ S+P+ LT +++A+A+NG+GKT F + L ++DP QA+ + PTRELA+Q +V +++ K+ I E V T T+ R +++GTPG I + K G LK +LV DEAD +L Sbjct: 145 TEDVTATKGNEFEDYFLKRDLLRGIY-EKGFEKPSPIQEESIPIALTGS--DILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKI--EVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRI---LDLAKKGVCVLKDCAMLVMDEADKLL 309
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20 Identity = 60/168 (35.71%), Postives = 97/168 (57.74%), Query Frame = 1 Query: 250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 + +D+NLS LL+G+Y F+KPS IQ ++ + ++IAQA++G+GKT F + +L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K +++GTPG + ++ + L +K+ V DEAD ML GF+D Sbjct: 33 SLDDMNLSESLLRGIYA-YGFEKPSAIQQRAILSCIKG--YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD 194
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20 Identity = 68/211 (32.23%), Postives = 117/211 (55.45%), Query Frame = 1 Query: 118 STAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 + A V GLT +K++ L E + ++++ T+ + T TF+ + L +LL+G+Y F+KPS IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PT+ELA Q +VL +G + + +C TN ++ VV GTPG + + + L +K+LV DEAD ML++ GF++ Sbjct: 3 AAAVAGVAGLTTAHAKRL---LREEDMTTVEFQTSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQKAIKQIIKG--RDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKELARQIQKVLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKE 202
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20 Identity = 69/211 (32.70%), Postives = 115/211 (54.50%), Query Frame = 1 Query: 118 STAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 + A V GLT +K + L E + + ++ T+ + T TF+ + L +LL+G+Y F+KPS IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA Q +VL +G + + +C TN ++ VV GTPG + + + L +K+LV DEAD ML++ GF++ Sbjct: 3 AAAVAGVAGLTSGAGRK--RLLREEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKE 203 The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bpback to top |