CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_ASPCL (ATP-dependent RNA helicase fal1 OS=Aspergillus clavatus GN=fal1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 63/190 (33.16%), Postives = 103/190 (54.21%), Query Frame = 1
Query:  181 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +D   D  ++  T+ +   T A TFED++L   LL+G+Y    ++ PS +Q+ ++  I     R+ IAQA++G+GKT  F + +L  +D  ++  QAL + PTRELA Q   V+  +G +  +  +C      TN     ++      VV GTPG +   +  + L    +K+LV DEAD +L+  GFR+
Sbjct:    5 IDRRNDDRLEFSTSKEV--TVAPTFEDMHLKESLLRGIYA-YGYESPSAVQSRAIVQICKG--RDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQSVIMALGDYMNV--QCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNR-GFRE 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.132e-19
Identity = 60/169 (35.50%), Postives = 97/169 (57.40%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS--TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +F+ + L  ELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++DPNLKA QAL + PTRELA Q  +V+  +G    I     +   +   +   + + PP    +V+GTPG I+  +  + L   ++K+ + DEAD ML   GF +
Sbjct:   24 SFDSMELKAELLRGVYA-YGFERPSAIQQRAIMPIIKG--NDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQEGPP----IVVGTPGRIQDMIQRRVLKTDQMKLFILDEADEMLSR-GFTE 184          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.132e-19
Identity = 66/189 (34.92%), Postives = 103/189 (54.50%), Query Frame = 1
Query:  184 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA-GFR 747
            D  +D  +K  T+   P +   TFE + L   LL+G+Y    F+ PS IQ+ ++  I+    +++IAQA++G+GKT  F +GML  +D + K  QAL + PTRELA Q  +V+R +G +  + +  A          ISK       V+ GTPG +   +  + +    +K+LV DEAD +L E  GF+
Sbjct:    4 DRNQDGKLKVKTSSKLPVSP--TFESMKLQENLLRGIY-GYGFEAPSAIQSRAITQIIRG--KDVIAQAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVA-LACTGGKALQQDISK-VNKGCHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFK 185          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 58/166 (34.94%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  253 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            F+DLNL P +++G++    ++ PS IQ  ++  I     R+++AQA++G+GKT  F +  L R+D N K+ QAL + PTRELA+Q   V+  +G +  +T   ++   S      + R  V  QVV+GTPG +   +  +     ++K+ + DEAD ML  +GF++
Sbjct:   25 FDDLNLKPNIVRGIF-GYGYETPSAIQQRAILPITEG--RDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRSGV--QVVVGTPGRVFDMIERRYFKTEKVKMFIMDEADEML-SSGFKE 184          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 56/167 (33.53%), Postives = 97/167 (58.08%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            TF+DLNL P +++G++    ++ PS IQ  ++  I     R+++AQA++G+GKT  F +  L R+D N K+ QAL + PTRELA+Q   V+  +G +  +T   ++    T+     +      Q+V+GTPG +   +  +     ++K+ + DEAD ML  +GF++
Sbjct:   24 TFDDLNLKPNIVRGIF-GYGYESPSAIQQRAILPITEG--RDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASI--GGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFKTDKVKMFILDEADEML-SSGFKE 184          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 63/190 (33.16%), Postives = 103/190 (54.21%), Query Frame = 1
Query:  181 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +D   D  ++  T+ +   T A TFED++L   LL+G+Y    ++ PS +Q+ ++  I     R+ IAQA++G+GKT  F + +L  +D  ++  QAL + PTRELA Q   V+  +G +  +  +C      TN     ++      VV GTPG +   +  + L    +K+LV DEAD +L+  GFR+
Sbjct:    5 IDRRTDDRLEFSTSKEV--TVAPTFEDMHLKESLLRGIYA-YGYESPSAVQSRAIVQICKG--RDTIAQAQSGTGKTATFSISILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNV--QCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNR-GFRE 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 58/167 (34.73%), Postives = 97/167 (58.08%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            TFE +NL  +LLKG+Y    F+ PS IQ+ ++  I++   ++ IAQA++G+GKT  F +GML  +D   K  QAL + PTRELA Q   V++ +G +  + +   +    T+     K+     Q+V GTPG +   +  + L    +K+++ DEAD ++ + GF++
Sbjct:   27 TFESMNLKTDLLKGIY-GYGFEAPSAIQSRAIMQIISG--KDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACI--GGTHVGEDIKKLQQGQQIVSGTPGRVVDMIKRRNLATRNIKMMILDEADELMTK-GFKE 187          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 63/190 (33.16%), Postives = 103/190 (54.21%), Query Frame = 1
Query:  181 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +D   D  ++  T+ +   T A TFED++L   LL+G+Y    ++ PS +Q+ ++  I     R+ IAQA++G+GKT  F + +L  +D  ++  QAL + PTRELA Q   V+  +G +  +  +C      TN     ++      VV GTPG +   +  + L    +K+LV DEAD +L+  GFR+
Sbjct:    5 IDRRADDRMEFNTSKEV--TVAPTFEDMHLKESLLRGIYA-YGYESPSAVQSRAIVQICKG--RDTIAQAQSGTGKTATFAISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNV--QCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNR-GFRE 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.930e-19
Identity = 62/168 (36.90%), Postives = 97/168 (57.74%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +F+ + L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++DPN+KA QAL + PTRELA Q  +V+  +G    I    C   T   + +   +  P   Q+V+GTPG I   +  + L   ++K+ + DEAD ML   GF +
Sbjct:   49 SFDSMELKPELLRGVYA-YGFERPSAIQQRAILPIVKG--NDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGP---QIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSR-GFTE 209          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.930e-19
Identity = 65/186 (34.95%), Postives = 103/186 (55.38%), Query Frame = 1
Query:  193 EDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA-GFR 747
            ED  +K  T+     +   TFE +NL  +LL+G+Y    F+ PS IQ+ ++  I++    ++IAQA++G+GKT  F +GML  +D   K  QAL + PTRELA Q  +V+  +G +  + S  A+    T    +++      QVV GTPG +        L    +++L+ DEAD +L E+ GF+
Sbjct:    7 EDKKLKFKTSKKLKISP--TFESMNLKDDLLRGIY-GYGFEAPSAIQSRAITQIISGT--DVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYMNVQS-YAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADELLGESLGFK 186          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_ASPCL8.665e-2033.16ATP-dependent RNA helicase fal1 OS=Aspergillus cla... [more]
IF4A_ASPTN1.132e-1935.50ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]
FAL1_ASHGO1.132e-1934.92ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]
IF4A_PICST1.478e-1934.94ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
IF4A_DEBHA1.478e-1933.53ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
FAL1_NEOFI1.478e-1933.16ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_DEBHA1.478e-1934.73ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
FAL1_ASPTN1.478e-1933.16ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]
IF4A_EMENI1.930e-1936.90ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
FAL1_VANPO1.930e-1934.95ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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