CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DD19A_MOUSE (ATP-dependent RNA helicase DDX19A OS=Mus musculus GN=Ddx19a PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 79/176 (44.89%), Postives = 113/176 (64.20%), Query Frame = 1
Query:  229 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRD 750
            +P  S  +FE+L L P+LL+G+Y  M F +PSKIQ  +LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+P  + PQ LC+ PT ELA+Q  +V+ +MGK H  +    AV  +      + +   V+ Q+VIGTPGT+  W S  K +   ++K+ V DEAD M+   G +D
Sbjct:   85 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-----LERGQKVSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQD 254          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 77/177 (43.50%), Postives = 115/177 (64.97%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRD 750
            ++P  S  +FE+L L P+LL+G+Y  M F +PSKIQ  +LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+P+ + PQ LC+ PT ELA+Q  +V+ +MGK +  +    AV  +      + +   ++ Q+VIGTPGT+  W S  K +   ++K+ V DEAD M+   G +D
Sbjct:   84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQD 254          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_PHANO (ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria nodorum GN=DBP5 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 87/225 (38.67%), Postives = 128/225 (56.89%), Query Frame = 1
Query:  106 SEDKSTAELDVEG---------LTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +E  + A+  V+G         LT  E K   K  D   D +         P  SA +FE+L LS ELLKG+   M F+KPSKIQ  +LP++L  P  N+IAQ+++G+GKT  F L +LSR+D +   PQA+ + P+RELA Q L V+  MG+   G+ +  A+P       P  +   + A V++GTPGT+++ +  + +    +KILV DEAD+MLD+ G  D
Sbjct:   16 AEQSTVAQAQVDGSGEPANGSPLTETEYKVEVKLADMQADPN--------NPLYSAQSFEELQLSEELLKGVR-NMNFRKPSKIQEKALPLLLMNPPTNMIAQSQSGTGKTAAFSLNILSRIDLSRNEPQAIALAPSRELARQILGVITHMGQFMEGLKTMAAIPD------PTKRNQRLDAHVLVGTPGTVQEQLKRRLIKSDSIKILVLDEADNMLDQQGMGD 225          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_BOTFB (ATP-dependent RNA helicase dbp5 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 77/176 (43.75%), Postives = 111/176 (63.07%), Query Frame = 1
Query:  229 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +P  S  TFE L +   +LKGLY  M F+KPSKIQ  +LP++L  P  N+IAQ+++G+GKT  FV+ +LSR+D      PQALC+ P+RELA Q   V+R +G+   G+T + A+P        + +   V A VV+GTPGT+   +  + +  S++KIL  DEAD+MLD+ G  D
Sbjct:   63 SPLYSVETFEQLGIDASILKGLYA-MNFKKPSKIQEKALPLLLRNPPTNMIAQSQSGTGKTAAFVITILSRLDFSKPTTPQALCLAPSRELARQIEGVIRSIGQFVDGLTVQAAIPG------AVERNAKVNAMVVVGTPGTVMDLIKRRSIDASQMKILCLDEADNMLDQQGLGD 231          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_ASPOR (ATP-dependent RNA helicase dbp5 OS=Aspergillus oryzae GN=dbp5 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 78/180 (43.33%), Postives = 114/180 (63.33%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + P  S  +FEDL L P +L+GL   M F+KPSKIQ  +LP++L  P +NL+ Q+++G+GKT  FVL  LSR+D +     K PQAL + PTRELA Q + V++ MG+   G+    AVP D+      S+   + + VV+GTPGT+   +  + +  ++LK+LV DEAD+MLD+ G  D
Sbjct:   71 NNPLYSVKSFEDLGLDPRILQGLSA-MNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRLDLSTEQAQKTPQALILAPTRELARQIVGVIQCMGQFLDGLNVSTAVPADTN-----SRHSKIESSVVVGTPGTVMDMIRKRVMVANKLKVLVLDEADNMLDQQGLGD 244          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DD19A_BOVIN (ATP-dependent RNA helicase DDX19A OS=Bos taurus GN=DDX19A PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.868e-32
Identity = 77/177 (43.50%), Postives = 113/177 (63.84%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRD 750
            ++P  S  +FE+L L P+LL+G+Y  M F +PSKIQ  +LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+P  + PQ LC+ PT ELA+Q  +V+ +MGK H  +    AV  +      + +   ++  +VIGTPGT+  W S  K +   ++K+ V DEAD M+   G +D
Sbjct:   84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQD 254          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_NEOFI (ATP-dependent RNA helicase dbp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.868e-32
Identity = 81/180 (45.00%), Postives = 111/180 (61.67%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + P  S   FEDL L P +LKGL   M F+KPSKIQ  +LP++L  P +NL+ Q+++G+GKT  FVL  LSRVD +     K PQAL + PTRELA Q L V++ MG+   G+    AVPTD       S+   +   +V+GTPGT+   +  +    ++LK+LV DEAD+MLD+ G  D
Sbjct:   70 NNPLYSVKNFEDLGLDPRILKGLS-NMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQILGVVQVMGQFVDGLIIGAAVPTDRD-----SRPKRLECSIVVGTPGTVGDMIKRRTFIPNKLKVLVLDEADNMLDQQGLGD 243          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_ASPFU (ATP-dependent RNA helicase dbp5 OS=Aspergillus fumigatus GN=dbp5 PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.868e-32
Identity = 81/180 (45.00%), Postives = 111/180 (61.67%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + P  S   FEDL L P +LKGL   M F+KPSKIQ  +LP++L  P +NL+ Q+++G+GKT  FVL  LSRVD +     K PQAL + PTRELA Q L V++ MG+   G+    AVPTD       S+   +   +V+GTPGT+   +  +    ++LK+LV DEAD+MLD+ G  D
Sbjct:   70 NNPLYSVKNFEDLGLDPRILKGLS-SMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQILGVVQVMGQFVDGLIIGAAVPTDRD-----SRPKRLECSIVVGTPGTVGDMIKRRTFIPNKLKVLVLDEADNMLDQQGLGD 243          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_MAGGR (ATP-dependent RNA helicase DBP5 OS=Magnaporthe grisea GN=DBP5 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.198e-31
Identity = 78/174 (44.83%), Postives = 117/174 (67.24%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL-KAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAG 741
            D+P +S ++F +L L   ++ GL + M F+KPSKIQA +LP++L+ P RN+IAQ+++G+GKT  FV+ +LSRVD N    PQAL + P+RELA Q   V++ +G+  TG+  + A+P        IS+   V A VV+GTPGT+   +  ++   S+LK+LV DEAD+MLD+ G
Sbjct:   89 DSPLSSISSFSELGLPQGIIDGL-LAMNFKKPSKIQARALPLMLSNPPRNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSIGQFCTGLVVDAAIPG------AISRETGVKANVVVGTPGTVMDLIRRRQFDVSQLKLLVVDEADNMLDQQG 255          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DD19B_HUMAN (ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.750e-31
Identity = 76/177 (42.94%), Postives = 114/177 (64.41%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRD 750
            ++P  S  +FE+L L P+LL+G+Y  M F +PSKIQ  +LP++L  P +NLIAQ+++G+GKT  FVL MLS+V+P  K PQ LC+ PT ELA+Q  +V+ +MGK +  +    AV  +      + +   ++ Q+VIGTPGT+  W S  K +   ++K+ V DEAD M+   G +D
Sbjct:   85 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQD 255          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DD19A_MOUSE3.392e-3244.89ATP-dependent RNA helicase DDX19A OS=Mus musculus ... [more]
DD19A_HUMAN7.556e-3243.50ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]
DBP5_PHANO7.556e-3238.67ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria n... [more]
DBP5_BOTFB7.556e-3243.75ATP-dependent RNA helicase dbp5 OS=Botryotinia fuc... [more]
DBP5_ASPOR7.556e-3243.33ATP-dependent RNA helicase dbp5 OS=Aspergillus ory... [more]
DD19A_BOVIN9.868e-3243.50ATP-dependent RNA helicase DDX19A OS=Bos taurus GN... [more]
DBP5_NEOFI9.868e-3245.00ATP-dependent RNA helicase dbp5 OS=Neosartorya fis... [more]
DBP5_ASPFU9.868e-3245.00ATP-dependent RNA helicase dbp5 OS=Aspergillus fum... [more]
DBP5_MAGGR2.198e-3144.83ATP-dependent RNA helicase DBP5 OS=Magnaporthe gri... [more]
DD19B_HUMAN3.750e-3142.94ATP-dependent RNA helicase DDX19B OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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