CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_NEUCR (ATP-dependent RNA helicase dbp-5 OS=Neurospora crassa GN=dbp-5 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 83/224 (37.05%), Postives = 134/224 (59.82%), Query Frame = 1
Query:   94 TANTSEDKSTAELDVEGLTIDESKK---VNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +A  SE+    E +    +I+ES+     N++  E + S ++  T  ++P  S ++F++L L   + +GL + + F+KPSK+Q   LP++L+ P RN+IAQ+++G+GKT  FVL +LSR+D      PQAL + P+RELA Q   V++ +G+    +  E A+P        IS+   V   VV+GTPGT+   +  ++   S+LK+LV DEAD+MLD+ G  D
Sbjct:   25 SAPASEEPKAPENET---SIEESQSNLVKNEYEVEIKLSDLQNDT--ESPLYSVSSFDELGLPEAVNRGL-LAINFKKPSKVQEKCLPLMLSDPPRNMIAQSQSGTGKTAAFVLTVLSRIDLSKPHQPQALLLAPSRELARQIQTVVQTIGQFCENLIVEAAIPG------AISRETGVRGSVVVGTPGTVMDLVKRRQFDISQLKVLVIDEADNMLDQQGLGD 236          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.475e-27
Identity = 72/170 (42.35%), Postives = 99/170 (58.24%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T   TFED  L  ELL G++ E  F+KPS IQ  ++P+ +T   R+++A+A+NG+GKT  FV+  L +V P L   QAL + PTRELA+Q  +V+R +GKH GI+  C V T  TN      R   T  +++GTPG +    S K    S   + + DEAD ML
Sbjct:   37 TDDVLNTKGNTFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 201          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.475e-27
Identity = 72/170 (42.35%), Postives = 99/170 (58.24%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T   TFED  L  ELL G++ E  F+KPS IQ  ++P+ +T   R+++A+A+NG+GKT  FV+  L +V P L   QAL + PTRELA+Q  +V+R +GKH GI+  C V T  TN      R   T  +++GTPG +    S K    S   + + DEAD ML
Sbjct:   37 TDDVLNTKGNTFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 201          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP5_COCIM (ATP-dependent RNA helicase DBP5 OS=Coccidioides immitis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.285e-27
Identity = 81/233 (34.76%), Postives = 132/233 (56.65%), Query Frame = 1
Query:  100 NTSEDKSTAELD---------VEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD---PNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +T  +K  AE D         V+G +  E ++ ++  D   D ++K        + P  S  +FE+L L+  +  GL  +M F++PSKIQ  +LP+++  P  N+IAQ+++G+GKT  FVL +LSR++      K+PQAL + P+RELA Q + V++ MG    G+    AVP +      +++   V A +V+GTPGT++  +  +      L++LV DEAD+MLD+ G  D
Sbjct:   33 STEAEKPAAEDDSGKGPSIPQVDGAS--EDQRGSELQDSEFDVNVKLSDLQADPNNPLYSIKSFEELGLAEPIQMGLS-KMNFRRPSKIQERALPLLMANPPTNMIAQSQSGTGKTAAFVLNILSRLELTPEKQKSPQALVLAPSRELARQIVGVIQAMGTFVEGLFVATAVPME------MNRNQRVEASIVVGTPGTVQDLIKKRLFNTQHLRVLVLDEADNMLDQQGLGD 256          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.290e-27
Identity = 70/170 (41.18%), Postives = 99/170 (58.24%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T   +FED  L  ELL G++ E  F+KPS IQ  ++P+ +T   R+++A+A+NG+GKT  FV+  L ++ P L   QAL + PTRELA+Q  +V+R +G+H G++  C V T  TN      R   T  V++GTPG +    S K    S   + V DEAD ML
Sbjct:   22 TDDVLNTKGNSFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRELALQTSQVIRTLGRHCGVS--CMVTTGGTNLRDDILRLNETVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKML 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX19_DROME (DEAD-box helicase Dbp80 OS=Drosophila melanogaster GN=Dbp80 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.318e-27
Identity = 85/239 (35.56%), Postives = 122/239 (51.05%), Query Frame = 1
Query:   97 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSS----IKTVTTG---------------DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            A  SED+  ++L V+ L +D         D A+ +     IK +  G               ++P  S  TFE L+L   LLKG+Y  M F  PSKIQ  +LP +L  P +N+IAQ+++G+GKT  FVL MLSRV+  L  PQ LC+ PT ELAIQ  EV  +MG+    I    AV  +      + +   +   ++IGTPG +  W +  +     ++ + V DEAD M+   G  D
Sbjct:    5 AKKSEDQEVSKL-VDKLNLDSKSGEETDFDVADPAETSLLIKILGKGLVNTKLSLDLQQKNPNSPLHSVKTFEALHLKASLLKGIYA-MGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRGEE-----VDRSKKIEEHILIGTPGKLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHD 236          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.129e-26
Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T   +FED NL  ELL G++ E  F+KPS IQ  S+PM L    R+++A+A+NG+GKT  F++  L  V P L   QAL + PTRELA+Q  +V+R +GKH G  ++C V T  T+      R      +++GTPG +    + K +  S   + V DEAD ML
Sbjct:   21 TEDVLNTKGKSFEDFNLKRELLMGIF-EAGFEKPSPIQEESIPMALAG--RDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVG--TQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKML 185          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.744e-26
Identity = 70/170 (41.18%), Postives = 97/170 (57.06%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T   +FED NL  ELL G++ E  F+KPS IQ  S+PM L    R+++A+A+NG+GKT  F++  L ++ P L   QAL + PTRELA+Q  +V+R +GKH GI  +C V T  T+      R      V++GTPG +    +      S   + V DEAD ML
Sbjct:   21 TEDVLNTKGKSFEDFNLKRELLMGIF-EAGFEKPSPIQEESIPMALAG--RDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHLGI--QCMVTTGGTSLKDDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKML 185          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.195e-26
Identity = 71/170 (41.76%), Postives = 96/170 (56.47%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T   TFED  L  ELL G++ E  F+KPS IQ  S+P+ L    R+++A+A+NG+GKT  FV+  L +V       QAL + PTRELA+Q  +V+R +GKH GI+  C V T  TN      R   T  +++GTPG +    S K    S   + + DEAD ML
Sbjct:   25 TEDVLSTKGNTFEDFYLKRELLMGIF-EAGFEKPSPIQEESIPVALAG--RDILARAKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSECNLFIMDEADKML 189          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 71/170 (41.76%), Postives = 96/170 (56.47%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T   TFED  L  ELL G++ E  F++PS IQ  ++P+ L    R+++A+A+NG+GKT  FV+  L  V P +   QAL + PTRELA+Q  +V+R +GKH GI+  C V T  TN      R      V++GTPG +    S K    S   + V DEAD ML
Sbjct:   20 TDDVLNTKGNTFEDFYLRRELLMGIF-EAGFERPSPIQEEAIPIALAR--RDILARAKNGTGKTAAFVIPTLEIVKPKVNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDIMRLNEPVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKML 184          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP5_NEUCR1.742e-2837.05ATP-dependent RNA helicase dbp-5 OS=Neurospora cra... [more]
DHH1_YEAST1.475e-2742.35ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS71.475e-2742.35ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DBP5_COCIM3.285e-2734.76ATP-dependent RNA helicase DBP5 OS=Coccidioides im... [more]
DHH1_CANGA4.290e-2741.18ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
DDX19_DROME7.318e-2735.56DEAD-box helicase Dbp80 OS=Drosophila melanogaster... [more]
DHH1_CANAL2.129e-2641.18ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
DHH1_PICST4.744e-2641.18ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
DHH1_VANPO6.195e-2641.76ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DHH1_ASHGO1.057e-2541.76ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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