CB290926
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBPA_BACSU (ATP-dependent RNA helicase dbpA OS=Bacillus subtilis GN=dbpA PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12 Identity = 47/160 (29.38%), Postives = 83/160 (51.88%), Query Frame = 1 Query: 253 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 732 F++ +S ++L+ L + + +P+K+Q +P L ++L+ +++ GSGKT F + + + + PQAL + PTRELA+Q E + +G+ I + S + + + +V+GTPG + + L RL LV DEAD ML+ Sbjct: 4 FKNYQISHDILRALE-GLGYTEPTKVQQSVIPAALER--KDLVVKSQTGSGKTASFGIPLCELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQ--KSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLN 158
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP7_PICST (ATP-dependent RNA helicase DBP7 OS=Pichia stipitis GN=DPB7 PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12 Identity = 59/206 (28.64%), Postives = 101/206 (49.03%), Query Frame = 1 Query: 160 SKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK-------APQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWM-SAKKLGFSRLKILVYDEADHMLDEAGFRD 750 S + + L ++S KT + P A+TFE L ++ L K L ++F+ P+K+Q +P +L+ R+L +A+ GSGKT F+L + ++ K A+ + PTRELA Q VL + + + I + + R V +++GTPG + M + + L S+L+ L+ DE D ++ E GF + Sbjct: 115 SNQSSSQLKVTKESDEKTYLPSNAPVEDASTFEGLGINERLSKHLTETLRFKNPTKVQKSVIPTMLSTE-RDLFIKAQTGSGKTLSFLLPIFHKLMMENKHKINRDSGLFAVILTPTRELATQIYGVLETLTRCYHHIVPGIVIGGEKKKSEKARIRKGV--NILVGTPGRLADHMENTESLDISQLRWLILDEGDKLV-ELGFEE 316
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP3_NEOFI (ATP-dependent RNA helicase dbp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp3 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12 Identity = 53/157 (33.76%), Postives = 76/157 (48.41%), Query Frame = 1 Query: 310 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA------PQALCICPTRELAIQNLEVLRKMGKHTGITSEC---AVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753 F P+ IQ+ + P++ R++I A GSGKT F L + ++ + K P A+ I PTRELA+Q + L K G I C V D + TA +V+ TPG +K + + ++K LV DEAD MLD+ GF D Sbjct: 105 FSSPTPIQSATWPLLFAG--RDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVKKDE------QREALKTAAIVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDK-GFEQD 252
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: Y1965_STAAB (Probable DEAD-box ATP-dependent RNA helicase SAB1965c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1965c PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12 Identity = 54/170 (31.76%), Postives = 93/170 (54.71%), Query Frame = 1 Query: 253 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI---TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753 F++L +S ++ L M F++P+ IQ S+P L +++ QA+ G+GKT F + ++ +V + Q+L + PTRELA+Q E LR+ + G+ T +P + + K+ P Q+V+GTPG + ++ + L + L+ DEAD M++ GF DD Sbjct: 4 FKELGISDNTVQSLE-SMGFKEPTPIQKDSIPYALQGI--DILGQAQTGTGKTGAFGIPLIEKVVWK-QGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIE--RQIKALKKGP---QIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMN-MGFIDD 163
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12 Identity = 53/153 (34.64%), Postives = 84/153 (54.90%), Query Frame = 1 Query: 310 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPN---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753 ++ P+ IQ S+P+I + R+L+A A+ GSGKT F+L +LS++ DP+ L PQ + + PTRELAIQ RK + + + + T++ ++ VVI TPG + ++ + F + +V DEAD MLD GF +D Sbjct: 265 YKIPTPIQKCSIPVISSG--RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYL--KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD-MGFSED 412
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12 Identity = 58/183 (31.69%), Postives = 90/183 (49.18%), Query Frame = 1 Query: 226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRD 750 D P T T F +L P L+ GL F + + IQA++LP+ L P ++ QA+ G+GKT F++ +++R+ D + P+AL + PTRELAIQ + K G G+ A+ +Y + V+I TPG + ++ K + +I V DEAD M D +D Sbjct: 3 DKPLTDVT-FSSFDLHPALIAGLE-SAGFTRCTPIQALTLPVAL--PGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGL--RFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKD 179
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12 Identity = 58/183 (31.69%), Postives = 90/183 (49.18%), Query Frame = 1 Query: 226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRD 750 D P T T F +L P L+ GL F + + IQA++LP+ L P ++ QA+ G+GKT F++ +++R+ D + P+AL + PTRELAIQ + K G G+ A+ +Y + V+I TPG + ++ K + +I V DEAD M D +D Sbjct: 3 DKPLTDVT-FSSFDLHPALIAGLE-SAGFTRCTPIQALTLPVAL--PGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGL--RFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKD 179
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RHLB_VIBSL (ATP-dependent RNA helicase rhlB OS=Vibrio splendidus (strain LGP32) GN=rhlB PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12 Identity = 55/175 (31.43%), Postives = 89/175 (50.86%), Query Frame = 1 Query: 253 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV---------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 F DL+L P++++GL + F + IQA++LP++LT +++ QA+ G+GKT F+ + + PN P+A+ + PTRELAIQ + TGI + A +S Y + A ++IGT G I + K + ++ +V DEAD M D +D Sbjct: 11 FADLDLLPQVIEGLE-KKGFDYCTPIQALALPVLLTG--QDIAGQAQTGTGKTLAFLTATFNHLLKTPEHEGRKPN--QPRAIIMAPTRELAIQIYNDADSLVASTGIKAALAYGGES--YDKQLGKIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKD 178
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RHLB_SHESH (ATP-dependent RNA helicase rhlB OS=Shewanella sediminis (strain HAW-EB3) GN=rhlB PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12 Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 1 Query: 235 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 + S F D +L E+ L E F+ + IQA+SLP++L +++ QA+ G+GKT F++ + + L P+A+ + PTRELAIQ + + KHTG+ + + +Y K ++IGT G I ++ + S ++ +V DEAD M D +D Sbjct: 5 HLSNQKFADFSLQTEIKTALN-ESGFEYCTPIQALSLPILLQK--KDIAGQAQTGTGKTLAFLVATFNHLLTTPIPEGRQLNQPRAIIMAPTRELAIQIAKDADLLAKHTGL--KVGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFDLGFIKD 178
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPA (ATP-dependent RNA helicase rhlB OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rhlB PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12 Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 1 Query: 235 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 + S F D L E+ + L E F+ + IQA+SLP++L +++ QA+ G+GKT F++ + + + L P+A+ + PTRELAIQ + + KHTG+ + + Y K ++IGT G I ++ + S ++ +V DEAD M D +D Sbjct: 5 HLSTQKFADFPLHKEVHQALN-EAGFEFCTPIQALSLPILLEK--KDIAGQAQTGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGL--KVGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKD 178 The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bpback to top |