CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBPA_BACSU (ATP-dependent RNA helicase dbpA OS=Bacillus subtilis GN=dbpA PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 47/160 (29.38%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  253 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 732
            F++  +S ++L+ L   + + +P+K+Q   +P  L    ++L+ +++ GSGKT  F + +    + +   PQAL + PTRELA+Q  E +  +G+   I +       S +      +    + +V+GTPG +   +    L   RL  LV DEAD ML+
Sbjct:    4 FKNYQISHDILRALE-GLGYTEPTKVQQSVIPAALER--KDLVVKSQTGSGKTASFGIPLCELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQ--KSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLN 158          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP7_PICST (ATP-dependent RNA helicase DBP7 OS=Pichia stipitis GN=DPB7 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 59/206 (28.64%), Postives = 101/206 (49.03%), Query Frame = 1
Query:  160 SKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK-------APQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWM-SAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            S + +  L   ++S  KT    + P   A+TFE L ++  L K L   ++F+ P+K+Q   +P +L+   R+L  +A+ GSGKT  F+L +  ++    K          A+ + PTRELA Q   VL  + + +  I     +  +         R  V   +++GTPG +   M + + L  S+L+ L+ DE D ++ E GF +
Sbjct:  115 SNQSSSQLKVTKESDEKTYLPSNAPVEDASTFEGLGINERLSKHLTETLRFKNPTKVQKSVIPTMLSTE-RDLFIKAQTGSGKTLSFLLPIFHKLMMENKHKINRDSGLFAVILTPTRELATQIYGVLETLTRCYHHIVPGIVIGGEKKKSEKARIRKGV--NILVGTPGRLADHMENTESLDISQLRWLILDEGDKLV-ELGFEE 316          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DBP3_NEOFI (ATP-dependent RNA helicase dbp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 53/157 (33.76%), Postives = 76/157 (48.41%), Query Frame = 1
Query:  310 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA------PQALCICPTRELAIQNLEVLRKMGKHTGITSEC---AVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753
            F  P+ IQ+ + P++     R++I  A  GSGKT  F L  + ++  + K       P A+ I PTRELA+Q  + L K G    I   C    V  D        +    TA +V+ TPG +K   +   +   ++K LV DEAD MLD+ GF  D
Sbjct:  105 FSSPTPIQSATWPLLFAG--RDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVKKDE------QREALKTAAIVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDK-GFEQD 252          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: Y1965_STAAB (Probable DEAD-box ATP-dependent RNA helicase SAB1965c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1965c PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 54/170 (31.76%), Postives = 93/170 (54.71%), Query Frame = 1
Query:  253 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI---TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753
            F++L +S   ++ L   M F++P+ IQ  S+P  L     +++ QA+ G+GKT  F + ++ +V    +  Q+L + PTRELA+Q  E LR+  +  G+   T    +P +    +   K+ P   Q+V+GTPG +   ++ + L    +  L+ DEAD M++  GF DD
Sbjct:    4 FKELGISDNTVQSLE-SMGFKEPTPIQKDSIPYALQGI--DILGQAQTGTGKTGAFGIPLIEKVVWK-QGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIE--RQIKALKKGP---QIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMN-MGFIDD 163          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 53/153 (34.64%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  310 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPN---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753
            ++ P+ IQ  S+P+I +   R+L+A A+ GSGKT  F+L +LS++  DP+   L  PQ + + PTRELAIQ     RK    + +  +  +    T++   ++       VVI TPG +  ++    + F   + +V DEAD MLD  GF +D
Sbjct:  265 YKIPTPIQKCSIPVISSG--RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYL--KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD-MGFSED 412          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 58/183 (31.69%), Postives = 90/183 (49.18%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRD 750
            D P T  T F   +L P L+ GL     F + + IQA++LP+ L  P  ++  QA+ G+GKT  F++ +++R+       D   + P+AL + PTRELAIQ  +   K G   G+    A+     +Y    +       V+I TPG +  ++   K +     +I V DEAD M D    +D
Sbjct:    3 DKPLTDVT-FSSFDLHPALIAGLE-SAGFTRCTPIQALTLPVAL--PGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGL--RFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKD 179          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 58/183 (31.69%), Postives = 90/183 (49.18%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRD 750
            D P T  T F   +L P L+ GL     F + + IQA++LP+ L  P  ++  QA+ G+GKT  F++ +++R+       D   + P+AL + PTRELAIQ  +   K G   G+    A+     +Y    +       V+I TPG +  ++   K +     +I V DEAD M D    +D
Sbjct:    3 DKPLTDVT-FSSFDLHPALIAGLE-SAGFTRCTPIQALTLPVAL--PGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGL--RFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKD 179          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RHLB_VIBSL (ATP-dependent RNA helicase rhlB OS=Vibrio splendidus (strain LGP32) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 55/175 (31.43%), Postives = 89/175 (50.86%), Query Frame = 1
Query:  253 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV---------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            F DL+L P++++GL  +  F   + IQA++LP++LT   +++  QA+ G+GKT  F+    + +          PN   P+A+ + PTRELAIQ       +   TGI +  A   +S  Y     +    A ++IGT G I  +   K    + ++ +V DEAD M D    +D
Sbjct:   11 FADLDLLPQVIEGLE-KKGFDYCTPIQALALPVLLTG--QDIAGQAQTGTGKTLAFLTATFNHLLKTPEHEGRKPN--QPRAIIMAPTRELAIQIYNDADSLVASTGIKAALAYGGES--YDKQLGKIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKD 178          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RHLB_SHESH (ATP-dependent RNA helicase rhlB OS=Shewanella sediminis (strain HAW-EB3) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 1
Query:  235 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + S   F D +L  E+   L  E  F+  + IQA+SLP++L    +++  QA+ G+GKT  F++   + +          L  P+A+ + PTRELAIQ  +    + KHTG+  +  +     +Y    K       ++IGT G I  ++    +  S ++ +V DEAD M D    +D
Sbjct:    5 HLSNQKFADFSLQTEIKTALN-ESGFEYCTPIQALSLPILLQK--KDIAGQAQTGTGKTLAFLVATFNHLLTTPIPEGRQLNQPRAIIMAPTRELAIQIAKDADLLAKHTGL--KVGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFDLGFIKD 178          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPA (ATP-dependent RNA helicase rhlB OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 1
Query:  235 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + S   F D  L  E+ + L  E  F+  + IQA+SLP++L    +++  QA+ G+GKT  F++   + +       +  L  P+A+ + PTRELAIQ  +    + KHTG+  +  +      Y    K       ++IGT G I  ++    +  S ++ +V DEAD M D    +D
Sbjct:    5 HLSTQKFADFPLHKEVHQALN-EAGFEFCTPIQALSLPILLEK--KDIAGQAQTGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGL--KVGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKD 178          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBPA_BACSU2.985e-1229.38ATP-dependent RNA helicase dbpA OS=Bacillus subtil... [more]
DBP7_PICST2.985e-1228.64ATP-dependent RNA helicase DBP7 OS=Pichia stipitis... [more]
DBP3_NEOFI2.985e-1233.76ATP-dependent RNA helicase dbp3 OS=Neosartorya fis... [more]
Y1965_STAAB3.899e-1231.76Probable DEAD-box ATP-dependent RNA helicase SAB19... [more]
VASA_DROME3.899e-1234.64ATP-dependent RNA helicase vasa OS=Drosophila mela... [more]
RHLB_XANC53.899e-1231.69ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_XANAC3.899e-1231.69ATP-dependent RNA helicase rhlB OS=Xanthomonas axo... [more]
RHLB_VIBSL3.899e-1231.43ATP-dependent RNA helicase rhlB OS=Vibrio splendid... [more]
RHLB_SHESH3.899e-1229.61ATP-dependent RNA helicase rhlB OS=Shewanella sedi... [more]
RHLB_SHEPA3.899e-1229.61ATP-dependent RNA helicase rhlB OS=Shewanella peal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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