CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.803e-25
Identity = 70/170 (41.18%), Postives = 96/170 (56.47%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T   TFED  L  ELL G++ E  F+KPS +Q  S+PM L    R+++A+A+NG+GKT  FV+  L +  P +   QAL + PTRELA+Q  +V+R +GKH G+  +C V T  T+      R      V++GTPG +    S K    S   + V DEAD ML
Sbjct:   21 TEDVLNTKGKTFEDFPLKRELLMGIF-EAGFEKPSPVQEESIPMALAG--RDILARAKNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHLGL--QCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKML 185          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 67/170 (39.41%), Postives = 97/170 (57.06%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T   +FED  L  ELL G++ E  F+KPS IQ  ++P+ +    ++++A+A+NG+GKT  FV+  L +V P L   QAL + PTRELA+Q  +V+R +GKH GI+  C V T  TN      R      +++GTPG +    S +    S   + + DEAD ML
Sbjct:   27 TDDVLNTKGRSFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAIAG--KDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDIMRLNEPVHILVGTPGRVLDLASRRVTDLSECHLFIMDEADKML 191          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_COCIM (ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23
Identity = 66/170 (38.82%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R +P +   QAL + PTRELA+Q  +V + +GKH GI     V T  T       R   T  +++GTPG I    S      S     V DEAD +L
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERTNPKISKTQALILVPTRELALQTSQVCKTLGKHLGI--NVMVTTGGTGLQDDIIRLSDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLL 202          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.411e-23
Identity = 68/186 (36.56%), Postives = 105/186 (56.45%), Query Frame = 1
Query:  193 EDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA-GFR 747
            +DS +K  T+     ++  TFE +NL P+LL+G+Y    F+ PS IQ+ ++  I++   +++IAQA++G+GKT  F +G+L  +D   K  QAL + PTRELA Q+  V+  +G +  +T+     T         K+     QVV GTPG +   +  + L     KILV DEAD +L E  GF+
Sbjct:    7 DDSKLKFKTSKKLKVSA--TFESMNLKPDLLRGIYF-YGFEYPSSIQSRAISQIISG--KDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHAC--TGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFK 185          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.411e-23
Identity = 66/170 (38.82%), Postives = 94/170 (55.29%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T  T FED  L  ELL G++ E  F+ PS IQ  ++P+ L    R+++A+A+NG+GKT  FV+  L +V+P +   QAL + PTRELA+Q  +V + +GKH GI  +  V T  TN      R   T  V++GTPG +           S   + + DEAD +L
Sbjct:   19 TEDVTATKGTGFEDFFLKRELLMGIF-EAGFENPSPIQEEAIPIALAG--RDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHLGI--KVMVTTGGTNLRDDIMRLEDTVHVLVGTPGRVLDLAGKGVADLSESPMFIMDEADKLL 183          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.094e-22
Identity = 65/170 (38.24%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L RV+P +   QAL + PTRELA+Q  +V + +GKH GI     V T  T       R      +++GTPG I           S  +  V DEAD +L
Sbjct:   40 TEDVTATKGLEFEDFFIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHLGI--NVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLL 204          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.428e-22
Identity = 63/167 (37.72%), Postives = 99/167 (59.28%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            TFE +NL P+LLKG+Y    F+ PS IQ+ ++  I+    R+ IAQA++G+GKT  F +GML  +D N K  QAL + PTRELA+Q   V++ +G +  I +   +    T+     K+     Q+V GTPG +   +  ++L    +K+L+ DEAD +  + GF++
Sbjct:   27 TFESMNLKPDLLKGIY-GYGFEAPSAIQSRAIMQIING--RDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACI--GGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADELFTK-GFKE 187          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.428e-22
Identity = 67/181 (37.02%), Postives = 103/181 (56.91%), Query Frame = 1
Query:  208 KTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            K V       T A TFE LNL  +LL+G+Y    F+KPS IQ  ++  I+    R++IAQA++G+GKT  F + ML  +D NL+  QAL + PTRELA+Q   V+  +G +  ++  C      T+     ++     QVV GTPG +   +  + L    +K+L+ DE+D +L++ GF+D
Sbjct:   10 KLVFESSEAVTVAPTFEALNLKEDLLRGIYA-YNFEKPSAIQQRAIIPIIRG--RDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVS--CHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNK-GFKD 184          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.428e-22
Identity = 64/170 (37.65%), Postives = 93/170 (54.71%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T   +FE+  L  ELL G++ E  F+KPS IQ  S+PM L    R+++A+A+NG+GKT  F++  L +V   L   Q L + PTRELA+Q  +V++ +GKH  +  +C V T  T       R      +++GTPG +    +     FS   + V DEAD ML
Sbjct:   20 TEDVTKTQGKSFEEFGLKRELLMGIF-EAGFEKPSPIQEESIPMALAG--RDILARAKNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKH--LKLQCMVTTGGTLLRDDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKML 184          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_NEOFI (ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.865e-22
Identity = 64/170 (37.65%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q  +V + +GKH GI     V T  T  +    R      +++GTPG +    S      S     V DEAD +L
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL 202          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_DEBHA1.803e-2541.18ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
DHH1_KLULA3.075e-2539.41ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
DHH1_COCIM2.204e-2338.82ATP-dependent RNA helicase DHH1 OS=Coccidioides im... [more]
FAL1_KLULA6.411e-2336.56ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
DHH1_YARLI6.411e-2338.82ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
DHH1_PHANO1.094e-2238.24ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]
FAL1_PICST1.428e-2237.72ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
FAL1_CRYNE1.428e-2237.02ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]
DHH1_PICGU1.428e-2237.65ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]
DHH1_NEOFI1.865e-2237.65ATP-dependent RNA helicase dhh1 OS=Neosartorya fis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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