CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.865e-22
Identity = 63/170 (37.06%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T    FED ++  ELL G++ EM ++KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     Q L + PTRELA+Q  +V + +G+H GI     V T  T       R      +++GTPG I           S   + V DEAD +L
Sbjct:   38 TEDVTATKGLEFEDFSIKRELLMGIF-EMGYEKPSPIQEEAIPVALTG--RDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHLGI--NVMVTTGGTTLRDDILRLQEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADKLL 202          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_ASPFU (ATP-dependent RNA helicase dhh1 OS=Aspergillus fumigatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.865e-22
Identity = 64/170 (37.65%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q  +V + +GKH GI     V T  T  +    R      +++GTPG +    S      S     V DEAD +L
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL 202          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_ASPCL (ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.865e-22
Identity = 64/170 (37.65%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q  +V + +GKH GI     V T  T  +    R      +++GTPG +    S      S     V DEAD +L
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL 202          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 68/190 (35.79%), Postives = 108/190 (56.84%), Query Frame = 1
Query:  190 AEDSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + D  ++ +  G  ++ Y   T +F+ ++L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++DPNLKA QAL + PTRELA Q  +V+  +G    +  EC      TN     K      QVV+GTPG ++  +  + L   ++K+ + DEAD ML   GF +
Sbjct:    3 SNDKGLEEIPEGQIESNYDEITDSFDSMDLKPELLRGIYA-YGFERPSAIQQRAIMPIIKGS--DVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFMSL--ECHACIGGTNVREDMKALQDGPQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEMLSR-GFTE 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_ASPTN (ATP-dependent RNA helicase dhh1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 64/170 (37.65%), Postives = 91/170 (53.53%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q   V + +GKH GI     V T  T  +    R      +++GTPG +    S      S     V DEAD +L
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL 202          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_ASPOR (ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae GN=dhh1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 64/170 (37.65%), Postives = 91/170 (53.53%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q   V + +GKH GI     V T  T  +    R      +++GTPG +    S      S     V DEAD +L
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL 202          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 64/170 (37.65%), Postives = 91/170 (53.53%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T    FED  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L R++P     QAL + PTRELA+Q   V + +GKH GI     V T  T  +    R      +++GTPG +    S      S     V DEAD +L
Sbjct:   38 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGI--NVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL 202          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_GIBZE (ATP-dependent RNA helicase DHH1 OS=Gibberella zeae GN=DHH1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22
Identity = 64/170 (37.65%), Postives = 91/170 (53.53%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T    FE+  L  +LL G++ E  F+KPS IQ  S+P+ LT   R+++A+A+NG+GKT  FV+  L R++P +   Q L + PTRELA+Q  +V + +GKH GI     V T  T       R      +V+GTPG I           S   + + DEAD +L
Sbjct:   33 TEDVTNTKGLEFENFALKRDLLMGIF-EAGFEKPSPIQEESIPVALTG--RDILARAKNGTGKTAAFVIPTLERINPKISKIQCLILVPTRELAMQTSQVCKTLGKHLGI--NVMVTTGGTGLRDDIIRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLL 197          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22
Identity = 64/172 (37.21%), Postives = 95/172 (55.23%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 735
            T D   T  + FED  L  ELL G+Y    F++PS IQ  ++PM LT   R+++A+A+NG+GKT  F++  L+R++ +L   QAL + PTRELA+Q  +V + +G H     +  + T  T       R      +++GTPG I    S    G ++  I V DEAD +L E
Sbjct:   27 TEDVTATQGSRFEDFGLRRELLMGIYTA-GFERPSPIQEQAIPMALTG--RDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIP-NLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIAGLNKCGIFVMDEADKLLSE 194          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_SCHPO (Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces pombe GN=ste13 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.258e-22
Identity = 65/170 (38.24%), Postives = 91/170 (53.53%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T  T FED  L  ELL G++ E  F++PS IQ  S+P+ L+   R+++A+A+NG+GKT  FV+  L +VD      Q L + PTRELA+Q  +V + +GKH  +  +  V T  T       R   T  +V+GTPG +          FS     V DEAD +L
Sbjct:   35 TEDVTKTRGTEFEDYYLKRELLMGIF-EAGFERPSPIQEESIPIALSG--RDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNV--KVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLL 199          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_BOTFB1.865e-2237.06ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]
DHH1_ASPFU1.865e-2237.65ATP-dependent RNA helicase dhh1 OS=Aspergillus fum... [more]
DHH1_ASPCL1.865e-2237.65ATP-dependent RNA helicase dhh1 OS=Aspergillus cla... [more]
IF4A_ASPCL3.182e-2235.79ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
DHH1_ASPTN3.182e-2237.65ATP-dependent RNA helicase dhh1 OS=Aspergillus ter... [more]
DHH1_ASPOR3.182e-2237.65ATP-dependent RNA helicase dhh1 OS=Aspergillus ory... [more]
DHH1_ASPNC3.182e-2237.65ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
DHH1_GIBZE5.427e-2237.65ATP-dependent RNA helicase DHH1 OS=Gibberella zeae... [more]
DHH1_CRYNV5.427e-2237.21ATP-dependent RNA helicase VAD1 OS=Cryptococcus ne... [more]
DHH1_SCHPO9.258e-2238.24Putative ATP-dependent RNA helicase ste13 OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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