CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 68/175 (38.86%), Postives = 99/175 (56.57%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK---ILVYDEADHMLDE 735
            T D   T    FED  L  ELL G+Y E  F++PS IQ  S+P+ LT   R+++A+A+NG+GKT  F + +L ++D +    QA+ I PTRELA+Q  +V +++GKH  I  +  V T  T+      R      +++GTPG I   +   K G   LK   +LV DEAD +L +
Sbjct:  122 TEDVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKI--QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI---LDLTKKGVCVLKDCSVLVMDEADKLLSQ 288          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 64/171 (37.43%), Postives = 100/171 (58.48%), Query Frame = 1
Query:  238 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            T    F+++ L  ELL+G+Y    F++PS IQA ++  ++     ++IAQA++G+GKT  F + +L R+DP++KA QAL + PTRELA Q  +V+  +G +  I  +C      TN      +    AQVV+GTPG +   ++ +     +LK+   DEAD ML   GF+D
Sbjct:   35 TVIDNFDNMELKEELLRGVYA-YGFERPSAIQARAIVPVIKG--HDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKI--DCHACIGGTNVREDMAKLNEGAQVVVGTPGRVYDMINRRAFKTDQLKMFCLDEADEMLSR-GFKD 199          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 62/166 (37.35%), Postives = 101/166 (60.84%), Query Frame = 1
Query:  253 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            F+D+NL+ +LL+G++    F KPS IQ  ++  I+     +++AQA++G+GKT  F +  L R+DP +KAPQAL + PTRELA+Q  +V+  +G H  I     +    T++V  ++     AQ+V+GTPG +   +  +K     +K+ + DEAD ML   GF++
Sbjct:   25 FDDMNLNEKLLRGVF-GYGFNKPSAIQQRAIMPIIEG--NDVLAQAQSGTGKTGTFSIAALQRIDPAIKAPQALMLAPTRELALQIQKVVMALGFHMDIKVHACI--GGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRKFKVDNIKMFILDEADEML-STGFKE 183          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 63/167 (37.72%), Postives = 97/167 (58.08%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            TFE +NL P+LLKG+Y    F+ PS IQ+ ++  I++   R+ IAQA++G+GKT  F +GML  +D   K  QAL + PTRELAIQ   V++ +G +  I +   +     N     K+     Q+V GTPG +   +  + L    +K+L+ DEAD +  + GF++
Sbjct:   27 TFESMNLKPDLLKGIYA-YGFETPSAIQSRAIMQIISG--RDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACI--GGKNVGEDVKKLQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTK-GFKE 187          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_CHAGB (ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 62/168 (36.90%), Postives = 90/168 (53.57%), Query Frame = 1
Query:  226 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            D   T    FED  L  +LL G++ E  F+KPS IQ  S+P+ L    R+++A+A+NG+GKT  FV+  L +++P +   Q L + PTRELA+Q  +V + +GKH GI     V T  T       R      +V+GTPG I      +    S   + + DEAD +L
Sbjct:    4 DVTNTKGLDFEDFGLKRDLLMGIF-EAGFEKPSPIQEESIPVALVG--RDILARAKNGTGKTAAFVIPALEKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGI--NVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLL 166          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 64/167 (38.32%), Postives = 98/167 (58.68%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +F+++NL PELL+G+Y    F++PS IQ  ++  ++     ++IAQA++G+GKT  F + +L ++DP+LKA QAL + PTRELA Q  +V+  +G    I  EC      T+     K      QVV+GTPG +   +  + L    +K+ V DEAD ML   GF +
Sbjct:   25 SFDEMNLKPELLRGIYA-YGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVLQKIDPSLKACQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSR-GFTE 185          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 67/173 (38.73%), Postives = 98/173 (56.65%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK---ILVYDEADHML 729
            T D   T    FED  L  +LLKG+Y E  F+KPS IQ  S+P+ LT    +++A+A+NG+GKT  F + +L ++DPN    QA+ + PTRELA+Q  +V +++ K+  I  +  V T  T+      R      +++GTPG I   +   K G   LK   +LV DEAD +L
Sbjct:  115 TADVTATKGNEFEDYFLKRDLLKGIY-EKGFEKPSPIQEESIPIALTGS--DILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNI--QVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRI---LDLTKKGVCVLKDCAMLVMDEADKLL 279          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 68/190 (35.79%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  190 AEDSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + D  ++ +  G  ++ Y   T +F+ + L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++DPN+K  QAL + PTRELA Q  +V+  +G    I  EC      TN     K      QVV+GTPG ++  +  + L    LK+ + DEAD ML   GF +
Sbjct:    3 SNDKGLEEIPEGQIESNYDEITDSFDSMELKPELLRGIYA-YGFERPSAIQQRAILPIIKG--NDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSR-GFTE 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_MAGGR (ATP-dependent RNA helicase DHH1 OS=Magnaporthe grisea GN=DHH1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 63/170 (37.06%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            T D   T    FE+  L  +LL G++ E  F+KPS IQ  S+P+ LT   R+++A+A+NG+GKT  FV+  L  ++P +   Q L + PTRELA+Q  +V + +GKH GI     V T  T       R      +V+GTPG I           S   + + DEAD +L
Sbjct:   27 TEDVTNTKGLEFENFGLKRDLLMGIF-EAGFEKPSPIQEESIPVALTG--RDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGI--NVMVTTGGTTLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLL 191          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 66/171 (38.60%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  247 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753
            TTF DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L+ +DP L+APQ L + PTRELA+Q  E + +  KH    +  A+       V +   ++ P   Q+V+GTPG +   +    L  S+L  LV DEAD ML   GF +D
Sbjct:    6 TTFADLGLKAPILEAL-TDLGYEKPSPIQAECIPHLLDG--RDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIED 169          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH8_ARATH1.209e-2138.86DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
IF4A_USTMA1.209e-2137.43ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
IF4A_CANGA1.209e-2137.35ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
FAL1_CANAL1.209e-2137.72ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]
DHH1_CHAGB1.209e-2136.90ATP-dependent RNA helicase DHH1 OS=Chaetomium glob... [more]
IF4A_NEUCR1.579e-2138.32ATP-dependent RNA helicase eIF4A OS=Neurospora cra... [more]
RH12_ARATH2.062e-2138.73DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
IF4A_NEOFI2.062e-2135.79ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
DHH1_MAGGR2.062e-2137.06ATP-dependent RNA helicase DHH1 OS=Magnaporthe gri... [more]
DEAD_KLEPN2.062e-2138.60Cold-shock DEAD box protein A OS=Klebsiella pneumo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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