CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 70/191 (36.65%), Postives = 105/191 (54.97%), Query Frame = 1
Query:  181 LDEAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +D+ EDS I      +T Y     TF+D+NL PELL+G+Y    F++PS IQ  ++  IL    R+++AQA++G+GKT  F + +L ++D +LK  QAL + PTRELA Q  +V+  +G    +  EC      T              VV+GTPG +   +  + L    +++ V DEAD ML   GF+D
Sbjct:    2 VDQLEDSVI------ETNYDEVIDTFDDMNLKPELLRGIYA-YGFERPSAIQQRAIMPILGE--RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV--ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSR-GFKD 180          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 68/190 (35.79%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  190 AEDSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + D  ++ +  G  +T Y   T +F+ ++L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++D  LKA QAL + PTRELA Q  +V+  +G    I  EC      TN            QVV+GTPG I   +  + L   ++K+ + DEAD ML   GF +
Sbjct:    3 SNDKGLEEIPEGQIETNYDEVTDSFDSMDLKPELLRGVYA-YGFERPSAIQQRAIKPIIAG--HDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTNVRDDMNALRAGPQVVVGTPGRIHDMIERRVLKTDQMKLFILDEADEMLSR-GFTE 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 68/190 (35.79%), Postives = 106/190 (55.79%), Query Frame = 1
Query:  190 AEDSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            + D  ++ +  G  ++ Y   T +F+ ++L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++DPN+K  QAL + PTRELA Q  +V+  +G    I  EC      TN     K      QVV+GTPG ++  +  + L    LK+ + DEAD ML   GF +
Sbjct:    3 SNDKGLEEIPEGQIESNYDEITDSFDAMDLKPELLRGVYA-YGFERPSAIQQRAILPIIKG--NDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSR-GFTE 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 66/189 (34.92%), Postives = 106/189 (56.08%), Query Frame = 1
Query:  184 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA-GFR 747
            D  ED  +K  T+     +S  TFE +NL  +LL+G+Y    F+ PS IQ+ ++  I++   +++IAQA++G+GKT  F +G+L  +D   K  QAL + PTRELA Q  +V++ +G +  + +  A+    T    + K      Q V GTPG +   +  + L    +++LV DEAD +L E  GF+
Sbjct:    4 DREEDQKLKFKTSKKLKVSS--TFESMNLKDDLLRGIY-SYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNA-FAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFK 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 66/189 (34.92%), Postives = 106/189 (56.08%), Query Frame = 1
Query:  184 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA-GFR 747
            D  ED  +K  T+     +S  TFE +NL  +LL+G+Y    F+ PS IQ+ ++  I++   +++IAQA++G+GKT  F +G+L  +D   K  QAL + PTRELA Q  +V++ +G +  + +  A+    T    + K      Q V GTPG +   +  + L    +++LV DEAD +L E  GF+
Sbjct:    4 DREEDQKLKFKTSKKLKVSS--TFESMNLKDDLLRGIY-SYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNA-FAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFK 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 735
            T D   T  + FED  L  ELL G+Y    F++PS IQ  ++PM LT   R+++A+A+NG+GKT  F++  L+R++ +L   QAL + PTRELA+Q  +V + +G H     +  + T  T       R      +++GTPG I    S      ++  + V DEAD +L E
Sbjct:   27 TEDVTATQGSRFEDFGLRRELLMGIYTA-GFERPSPIQEQAIPMALTG--RDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIP-NLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSE 194          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  247 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753
            TTF DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +   +    L  S+L  LV DEAD ML   GF +D
Sbjct:    6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIED 169          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 64/177 (36.16%), Postives = 100/177 (56.50%), Query Frame = 1
Query:  229 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753
            +P  SA TF DL + P +L+ +  ++ ++ P+ IQA ++P ++     +++  A+ G+GKT  F + MLS++D   K PQAL + PTRELA+Q  E   + G +    +   +   S+  V ++  +R    AQVV+GTPG +   +    L  SR+  LV DEAD ML   GF DD
Sbjct:    7 SPAASAATFADLQIHPRVLRAIG-DVGYESPTAIQAATIPALMAGS--DVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR---GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEML-TMGFADD 176          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  247 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753
            TTF DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +   +    L  S+L  LV DEAD ML   GF +D
Sbjct:    6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIED 169          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  247 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753
            TTF DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +   +    L  S+L  LV DEAD ML   GF +D
Sbjct:    6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIED 169          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_SCHPO2.694e-2136.65ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
IF4A_ASPNC2.694e-2135.79ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
IF4A_ASPFU3.518e-2135.79ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
FAL1_YEAST3.518e-2134.92ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS73.518e-2134.92ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
DHH1_CRYNE3.518e-2136.05ATP-dependent RNA helicase DHH1 OS=Cryptococcus ne... [more]
DEAD_SHIFL4.595e-2139.18Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_MYCTU4.595e-2136.16Cold-shock DEAD box protein A homolog OS=Mycobacte... [more]
DEAD_ECOLI4.595e-2139.18Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL64.595e-2139.18Cold-shock DEAD box protein A OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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