CB290926
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21 Identity = 70/191 (36.65%), Postives = 105/191 (54.97%), Query Frame = 1 Query: 181 LDEAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 +D+ EDS I +T Y TF+D+NL PELL+G+Y F++PS IQ ++ IL R+++AQA++G+GKT F + +L ++D +LK QAL + PTRELA Q +V+ +G + EC T VV+GTPG + + + L +++ V DEAD ML GF+D Sbjct: 2 VDQLEDSVI------ETNYDEVIDTFDDMNLKPELLRGIYA-YGFERPSAIQQRAIMPILGE--RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV--ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSR-GFKD 180
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21 Identity = 68/190 (35.79%), Postives = 104/190 (54.74%), Query Frame = 1 Query: 190 AEDSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 + D ++ + G +T Y T +F+ ++L PELL+G+Y F++PS IQ ++ I+ ++IAQA++G+GKT F + L ++D LKA QAL + PTRELA Q +V+ +G I EC TN QVV+GTPG I + + L ++K+ + DEAD ML GF + Sbjct: 3 SNDKGLEEIPEGQIETNYDEVTDSFDSMDLKPELLRGVYA-YGFERPSAIQQRAIKPIIAG--HDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTNVRDDMNALRAGPQVVVGTPGRIHDMIERRVLKTDQMKLFILDEADEMLSR-GFTE 186
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21 Identity = 68/190 (35.79%), Postives = 106/190 (55.79%), Query Frame = 1 Query: 190 AEDSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750 + D ++ + G ++ Y T +F+ ++L PELL+G+Y F++PS IQ ++ I+ ++IAQA++G+GKT F + L ++DPN+K QAL + PTRELA Q +V+ +G I EC TN K QVV+GTPG ++ + + L LK+ + DEAD ML GF + Sbjct: 3 SNDKGLEEIPEGQIESNYDEITDSFDAMDLKPELLRGVYA-YGFERPSAIQQRAILPIIKG--NDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSR-GFTE 186
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21 Identity = 66/189 (34.92%), Postives = 106/189 (56.08%), Query Frame = 1 Query: 184 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA-GFR 747 D ED +K T+ +S TFE +NL +LL+G+Y F+ PS IQ+ ++ I++ +++IAQA++G+GKT F +G+L +D K QAL + PTRELA Q +V++ +G + + + A+ T + K Q V GTPG + + + L +++LV DEAD +L E GF+ Sbjct: 4 DREEDQKLKFKTSKKLKVSS--TFESMNLKDDLLRGIY-SYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNA-FAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFK 186
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21 Identity = 66/189 (34.92%), Postives = 106/189 (56.08%), Query Frame = 1 Query: 184 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA-GFR 747 D ED +K T+ +S TFE +NL +LL+G+Y F+ PS IQ+ ++ I++ +++IAQA++G+GKT F +G+L +D K QAL + PTRELA Q +V++ +G + + + A+ T + K Q V GTPG + + + L +++LV DEAD +L E GF+ Sbjct: 4 DREEDQKLKFKTSKKLKVSS--TFESMNLKDDLLRGIY-SYGFEAPSSIQSRAITQIISG--KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNA-FAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFK 186
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21 Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 1 Query: 220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 735 T D T + FED L ELL G+Y F++PS IQ ++PM LT R+++A+A+NG+GKT F++ L+R++ +L QAL + PTRELA+Q +V + +G H + + T T R +++GTPG I S ++ + V DEAD +L E Sbjct: 27 TEDVTATQGSRFEDFGLRRELLMGIYTA-GFERPSPIQEQAIPMALTG--RDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIP-NLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSE 194
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21 Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 1 Query: 247 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753 TTF DL L +L+ L ++ ++KPS IQA +P +L R+++ A+ GSGKT F L +L +DP LKAPQ L + PTRELA+Q E + KH + A+ V + ++ P Q+V+GTPG + + L S+L LV DEAD ML GF +D Sbjct: 6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIED 169
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21 Identity = 64/177 (36.16%), Postives = 100/177 (56.50%), Query Frame = 1 Query: 229 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753 +P SA TF DL + P +L+ + ++ ++ P+ IQA ++P ++ +++ A+ G+GKT F + MLS++D K PQAL + PTRELA+Q E + G + + + S+ V ++ +R AQVV+GTPG + + L SR+ LV DEAD ML GF DD Sbjct: 7 SPAASAATFADLQIHPRVLRAIG-DVGYESPTAIQAATIPALMAGS--DVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR---GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEML-TMGFADD 176
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21 Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 1 Query: 247 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753 TTF DL L +L+ L ++ ++KPS IQA +P +L R+++ A+ GSGKT F L +L +DP LKAPQ L + PTRELA+Q E + KH + A+ V + ++ P Q+V+GTPG + + L S+L LV DEAD ML GF +D Sbjct: 6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIED 169
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21 Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 1 Query: 247 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753 TTF DL L +L+ L ++ ++KPS IQA +P +L R+++ A+ GSGKT F L +L +DP LKAPQ L + PTRELA+Q E + KH + A+ V + ++ P Q+V+GTPG + + L S+L LV DEAD ML GF +D Sbjct: 6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIED 169 The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bpback to top |