CB290926

Overview
NameCB290926
Unique NameCB290926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  247 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 753
            TTF DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +   +    L  S+L  LV DEAD ML   GF +D
Sbjct:    6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIED 169          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 61/166 (36.75%), Postives = 100/166 (60.24%), Query Frame = 1
Query:  253 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            F+D+NL  ELLKG+Y    F++PS IQ  ++  I+     +++AQA++G+GKT  F +  L R+D ++KAPQAL + PTRELA+Q  +V+  +  H  +     +    T++V  ++     AQ+V+GTPG +   +   +     +K+ + DEAD ML  +GFR+
Sbjct:   25 FDDMNLKDELLKGVY-GYGFEEPSAIQQRAILPIVEE--HDVLAQAQSGTGKTGTFSIAALQRIDSSIKAPQALILAPTRELALQIQKVVIALAFHMDVKVHACI--GGTSFVEDTEGLK-DAQIVVGTPGRVSDNIQRHRFKTDNIKMFILDEADEML-SSGFRE 183          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 63/167 (37.72%), Postives = 95/167 (56.89%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            TFE + L PELLKG+Y    F+ PS IQ+ ++  I++   R+ IAQA++G+GKT  F +GML  +D   K  QAL + PTRELA Q   V++ +G +  I +   +     N     KR     Q+V GTPG +   +  + L    +K+L+ DEAD +  + GF++
Sbjct:   27 TFESMRLKPELLKGIYA-YGFEAPSAIQSRAIMQIISG--RDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACI--GGKNVGTDIKRLQQGQQIVSGTPGRVLDVIKRRNLSTRHIKMLILDEADELFTK-GFKE 187          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.024e-20
Identity = 61/172 (35.47%), Postives = 93/172 (54.07%), Query Frame = 1
Query:  220 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 735
            T D   T    +ED     +LL G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L++++P +   Q L + PTRELA+Q  +V + +GKH GI     V T  T       R      +V+GTPG I      +    S   + + DEAD +L +
Sbjct:   36 TEDVTNTRGLDWEDFIHDRDLLMGIF-EAGFEKPSPIQEEAIPVALTG--RDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGI--NVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSQ 202          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: DDX6_DROME (Putative ATP-dependent RNA helicase me31b OS=Drosophila melanogaster GN=me31B PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.024e-20
Identity = 68/201 (33.83%), Postives = 106/201 (52.74%), Query Frame = 1
Query:  127 ELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 729
            +L + G T D+    +K     +D+  KT    DT       FE+  L  ELL G++ E  +++PS IQ  ++P+ L+   ++++A+A+NG+GKT  + + +L ++DP     QAL + PTRELA+Q  ++  ++ KH  I     V T  T       R     Q++I TPG I   M  K    S  +ILV DEAD +L
Sbjct:   21 DLQIAGNTSDDMGWKSKLKLPPKDNRFKTTDVTDT---RGNEFEEFCLKRELLMGIF-EKGWERPSPIQEAAIPIALSG--KDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQTSQICIELAKHLDI--RVMVTTGGTILKDDILRIYQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLL 213          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 64/169 (37.87%), Postives = 99/169 (58.58%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +F+D+NLS  LL+G+Y    F+KPS IQ  + LP I      ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +   ++ + L    +K+ V DEAD ML   GF+D
Sbjct:   25 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD 186          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 64/169 (37.87%), Postives = 99/169 (58.58%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +F+D+NLS  LL+G+Y    F+KPS IQ  + LP I      ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +   ++ + L    +K+ V DEAD ML   GF+D
Sbjct:   33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD 194          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 64/169 (37.87%), Postives = 99/169 (58.58%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +F+D+NLS  LL+G+Y    F+KPS IQ  + LP I      ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +   ++ + L    +K+ V DEAD ML   GF+D
Sbjct:   33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD 194          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 64/169 (37.87%), Postives = 99/169 (58.58%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +F+D+NLS  LL+G+Y    F+KPS IQ  + LP I      ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +   ++ + L    +K+ V DEAD ML   GF+D
Sbjct:   33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD 194          
BLAST of CB290926 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 64/169 (37.87%), Postives = 99/169 (58.58%), Query Frame = 1
Query:  250 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 750
            +F+D+NLS  LL+G+Y    F+KPS IQ  + LP I      ++IAQA++G+GKT  F + +L +++ +LKA QAL + PTRELA Q  +V+  +G + G  + C      TN    + K       +++GTPG +   ++ + L    +K+ V DEAD ML   GF+D
Sbjct:   33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD 194          
The following BLAST results are available for this feature:
BLAST of CB290926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DEAD_ECO574.595e-2139.18Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
IF4A_VANPO6.001e-2136.75ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
FAL1_LODEL6.001e-2137.72ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
DHH1_NEUCR1.024e-2035.47ATP-dependent RNA helicase dhh-1 OS=Neurospora cra... [more]
DDX6_DROME1.024e-2033.83Putative ATP-dependent RNA helicase me31b OS=Droso... [more]
IF4A1_RABIT1.337e-2037.87Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PANTR1.337e-2037.87Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A1_MOUSE1.337e-2037.87Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA1.337e-2037.87Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN1.337e-2037.87Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ad09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290926 ID=CB290926; Name=CB290926; organism=Citrus sinensis; type=EST; length=755bp
GCATCAACGGAGCCGAAGCGATCGTGGGGCGACGTAGCGGAGGAGGAGGA
GGAGAAGGAGAAAGAGGAGCGGAAGCAGCAGCAGCAGCAGCAAACCGCTA
ACACATCTGAGGATAAATCAACGGCGGAACTGGACGTCGAGGGTTTGACT
ATTGATGAGAGCAAGAAAGTCAACAAGTTCCTTGACGAAGCTGAAGACTC
TAGCATCAAAACCGTTACGACTGGTGATACACCTTATACCTCCGCAACTA
CATTTGAAGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTG
GAAATGAAATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTAT
GATCTTGACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTT
CTGGCAAGACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCA
AACCTCAAGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGC
AATTCAGAATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAA
CTTCAGAATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCA
AAAAGGCCACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCAT
TAAGAAATGGATGTCAGCAAAGAAATTGGGTTTCAGTCGCTTGAAAATTC
TTGTGTATGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGAT
GATTC
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