CB290934

Overview
NameCB290934
Unique NameCB290934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290934 vs. ExPASy Swiss-Prot
Match: THAS_MOUSE (Thromboxane-A synthase OS=Mus musculus GN=Tbxas1 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.461e-21
Identity = 58/191 (30.37%), Postives = 98/191 (51.31%), Query Frame = -2
Query:  257 HGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNK-PDYDGLNH-LKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSP 823
            H  + +  F++++++ +  LF  AG E  +  L++   LL+ H D QER  +EV    G +  P+Y  L   L  + M++ E LR+YPP    +R   ++ ++    +PAG  + + +  +H DPE W +    F PERF    ++  +   +Y PF  GPR C+G    L+  K+    +L  + FE SP
Sbjct:  318 HPTSTSKPFTVDEIVGQAFLFLIAGHEVITNTLSFITYLLATHPDCQERLLKEVDLFMGKHPAPEYHSLQEGLPYLDMVISETLRMYPPAFRFTREAAQDCEVLGQRIPAGTVLEIAVGALHHDPEHWPNPET-FDPERFT-AEARLQRRPFTYLPFGAGPRSCLGVRLGLLVVKLTILQVLHKFRFEASP 506          
BLAST of CB290934 vs. ExPASy Swiss-Prot
Match: CP4F4_RAT (Cytochrome P450 4F4 OS=Rattus norvegicus GN=Cyp4f4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.461e-21
Identity = 59/182 (32.42%), Postives = 98/182 (53.85%), Query Frame = -2
Query:  275 SMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGD----DAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNY 796
            S  D+  E   F F G +TT+  L+W +  L++H ++QER RQEV ++  + +    ++D L  L  + M + E LRL+PPVT++SR   ++  L     +P GV   + +   H +P +W D    D   F PE   +      ++ +++ PF+ GPR C+GQ FA+ E K+A  + L  +
Sbjct:  314 SDEDIRAEADTFMFEGHDTTASGLSWILYNLARHPEYQERCRQEVRELLRDRESTEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRRCTQDIVLPDGRVIPKGVICIINIFATHHNPTVWPDPEVYDPFRFDPENIKD------RSPLAFIPFSAGPRNCIGQTFAMNEMKVALALTLLRF 489          
BLAST of CB290934 vs. ExPASy Swiss-Prot
Match: CP4B1_HUMAN (Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.461e-21
Identity = 67/212 (31.60%), Postives = 110/212 (51.89%), Query Frame = -2
Query:  182 NVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKE-TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFA-EGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILRKL 808
            ++  S  D+  E   F F G +TT+  ++W +  ++ + + Q R R+EV ++ G+     +D L  +  + M + E  RLYPPV  + R + K  T +   +LPAG  I + +  +H++  +W D  V F   RF+ E  SK  ++  ++ PF+ GPR C+GQ FA+ E K+ T M L  + F L PS +        L  + G  L L+ L
Sbjct:  297 DIKLSDADLRAEVDTFMFEGHDTTTSGISWFLYCMALYPEHQHRCREEVREILGDQDFFQWDDLGKMTYLTMCIKESFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISMHIYALHRNSAVWPDPEV-FDSLRFSTENASK--RHPFAFMPFSAGPRNCIGQQFAMSEMKVVTAMCLLRFEFSLDPSRLPIKMPQLVLRSKNGFHLHLKPL 505          
BLAST of CB290934 vs. ExPASy Swiss-Prot
Match: CP4AA_RAT (Cytochrome P450 4A10 OS=Rattus norvegicus GN=Cyp4a10 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.461e-21
Identity = 65/207 (31.40%), Postives = 105/207 (50.72%), Query Frame = -2
Query:  182 SMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILRKL 796
            S  D+  E   F F G +TT+  ++W    L+ H + Q+R R+EV  V G+     +D L+ +    M + E LRLYPPV  + R +       +  +LP G+Q+ L +  +H +P++W +  V F P RFA     + ++  S+ PF+ G R C+G+ FA+ E K+   + L  +     P+ V  P     L  + G  L L+KL
Sbjct:  306 SDKDLRAEVDTFMFEGHDTTASGVSWIFYALATHPEHQQRCREEVQSVLGDGSSITWDHLDQIPYTTMCIKEALRLYPPVPGIVRELSTSVTFPDGRSLPKGIQVTLSIYGLHHNPKVWPNPEV-FDPSRFAPD---SPRHSHSFLPFSGGARNCIGKQFAMSEMKVIVALTLLRFELLPDPTKVPIPLPRLVLKSKNGIYLYLKKL 508          
BLAST of CB290934 vs. ExPASy Swiss-Prot
Match: CP4X1_RAT (Cytochrome P450 4X1 OS=Rattus norvegicus GN=Cyp4x1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.909e-21
Identity = 63/208 (30.29%), Postives = 112/208 (53.85%), Query Frame = -2
Query:  182 FSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILRKL 799
            FS  D+  E   F +AG + ++  ++W +  L+ + + Q+R R E+  + G+     ++ L+ +    M + E LRL PP+  +SR + K   L +  +LPAG+ + L +  +H +P +W D  V F P RF +  S+  ++  ++ PF+ GPR C+GQ FA++E K+A  + L  +      +   A ++   L P+ G  L L+KL
Sbjct:  299 FSDADLRSEVNTFMWAGHDASAASISWLLYCLALNPEHQDRCRTEIRSILGDGSSITWEQLDEIPYTTMCIKETLRLIPPIPSISRELSKPLTLPDGHSLPAGMTVVLSIWGLHHNPAVWKDPKV-FDPLRFTKENSEQ-RHPCAFLPFSSGPRNCIGQQFAMLELKVAIALTLLRFRVAADLTRPPAFSSHTVLRPKHGIYLHLKKL 504          
BLAST of CB290934 vs. ExPASy Swiss-Prot
Match: CP4AE_MOUSE (Cytochrome P450 4A14 OS=Mus musculus GN=Cyp4a14 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.909e-21
Identity = 64/207 (30.92%), Postives = 102/207 (49.28%), Query Frame = -2
Query:  182 SMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILRKL 796
            S  D+  E   F F G +TT+  ++W    L+ H + Q+R R+EV  + G+     +D L  +    M + E LRLYPPV  +SR +       +  ++P G+   + +  +H +P  W +  V F P RFA   S  +    +Y PF+ G R C+G+ FA+ E K+A  + L  +     P+ +  P A   L  + G  L L+KL
Sbjct:  304 SDEDLRAEVDTFMFEGHDTTASGISWIFYALATHPEHQQRCREEVQSILGDGTSVTWDHLGQMPYTTMCIKEALRLYPPVISVSRELSSPVTFPDGRSIPKGITATISIYGLHHNPRFWPNPKV-FDPSRFAPDSSHHSH---AYLPFSGGSRNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPIARLVLKSKNGIHLCLKKL 506          
BLAST of CB290934 vs. ExPASy Swiss-Prot
Match: CP4A5_RABIT (Cytochrome P450 4A5 OS=Oryctolagus cuniculus GN=CYP4A5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.909e-21
Identity = 64/207 (30.92%), Postives = 105/207 (50.72%), Query Frame = -2
Query:  182 SMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILRKL 796
            S  D+  E   F F G +TT+  ++W    L+ H + Q R R+E+  + G+     ++ L+ +    M + E +RLYPPV  +SR +       +  +LP G  + L +  +H +P +W +  V F P RF  G   +A++  ++ PF+ G R C+G+ FA+ E K+A  + L  +     P+ +  PTA   L    G  L LRKL
Sbjct:  308 SDQDLRAEVDTFMFEGHDTTASGVSWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDQMPYTTMCIKEAMRLYPPVPAISRDLSSPVTFPDGRSLPKGFTVTLSIYGLHHNPNVWPNPEV-FDPGRFTPG---SARHSHAFLPFSGGARNCIGKQFAMNELKVAVALTLVRFELLPDPTRIPKPTARLVLKSNNGIHLRLRKL 510          
BLAST of CB290934 vs. ExPASy Swiss-Prot
Match: CP4X1_HUMAN (Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.493e-21
Identity = 69/211 (32.70%), Postives = 108/211 (51.18%), Query Frame = -2
Query:  182 FSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKE-TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPT---LHPELGTQLILRKL 799
            FS  DV  E   F  AG +T +  ++W +  L+ + + QER R+EV  + G+     +D L  +    M + E  RL P V  +SR + K  T     TLPAG+ + L +  +H +P +W +  V F P RF++  S   ++  +Y PF+ G R C+GQ FA++E K+   +IL ++     P+    P   P    L P+ G  L L+KL
Sbjct:  301 FSDIDVHSEVSTFLLAGHDTLAASISWILYCLALNPEHQERCREEVRGILGDGSSITWDQLGEMSYTTMCIKETCRLIPAVPSISRDLSKPLTFPDGCTLPAGITVVLSIWGLHHNPAVWKNPKV-FDPLRFSQENSDQ-RHPYAYLPFSAGSRNCIGQEFAMIELKVTIALILLHFRVTPDPT---RPLTFPNHFILKPKNGMYLHLKKL 506          
BLAST of CB290934 vs. ExPASy Swiss-Prot
Match: CP4B1_RAT (Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 2.493e-21
Identity = 63/200 (31.50%), Postives = 104/200 (52.00%), Query Frame = -2
Query:  182 ECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKE-TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILRKL 775
            E   F F G +TT+  ++W +  ++ + + Q+  R+EV  + G+     +D L  +  + M + E  RLYPPV  + R + K  T +   +LPAG  I L +  +H++  +W D  V F P RF+   + A ++  ++ PF+ GPR C+GQ FA+ E K+ T + L  + F L PS +        L  + G  L L+ L
Sbjct:  308 EVDTFMFEGHDTTTSGISWFLYCMALYPEHQQLCREEVRGILGDQDSFQWDDLAKMTYLTMCMKECFRLYPPVPQVYRQLNKPVTFVDGRSLPAGSLISLHIYALHRNSTVWPDPEV-FDPLRFSPE-NAAGRHPFAFMPFSAGPRNCIGQQFAMNEMKVVTALCLLRFEFSLDPSKMPIKVPQLILRSKNGIHLYLKPL 505          
BLAST of CB290934 vs. ExPASy Swiss-Prot
Match: CP9E2_BLAGE (Cytochrome P450 9e2 OS=Blattella germanica GN=CYP9E2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.256e-21
Identity = 60/181 (33.15%), Postives = 101/181 (55.80%), Query Frame = -2
Query:  263 NDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNN--KPDYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLG---NLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFEL 790
            +D+  +  LF+FAG +T S LL +   LL+ + D Q R + E+ Q    N  K  Y+ ++ +K + M++ E LRLYPP     R  +K  +L    + TL  G  + +P+  +H DP+ + +   +F PERF++  +K      +Y PF  GPR C+G  FAL+E+K+A   +L  ++ ++
Sbjct:  322 DDLTAQAVLFFFAGFDTASTLLCFMSHLLATNPDVQNRLQDEIDQSLEENDGKLTYEAIHSMKYLDMVVSESLRLYPPAIFTDRKCVKNYRLPMEPSYTLEPGDAVWIPIYAIHHDPKYYPNPE-KFDPERFSDE-NKDNIKPFTYLPFGSGPRNCIGNRFALMESKIALVHLLCRFNLKV 500          
The following BLAST results are available for this feature:
BLAST of CB290934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 496
Match NameE-valueIdentityDescription
THAS_MOUSE1.461e-2130.37Thromboxane-A synthase OS=Mus musculus GN=Tbxas1 P... [more]
CP4F4_RAT1.461e-2132.42Cytochrome P450 4F4 OS=Rattus norvegicus GN=Cyp4f4... [more]
CP4B1_HUMAN1.461e-2131.60Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1... [more]
CP4AA_RAT1.461e-2131.40Cytochrome P450 4A10 OS=Rattus norvegicus GN=Cyp4a... [more]
CP4X1_RAT1.909e-2130.29Cytochrome P450 4X1 OS=Rattus norvegicus GN=Cyp4x1... [more]
CP4AE_MOUSE1.909e-2130.92Cytochrome P450 4A14 OS=Mus musculus GN=Cyp4a14 PE... [more]
CP4A5_RABIT1.909e-2130.92Cytochrome P450 4A5 OS=Oryctolagus cuniculus GN=CY... [more]
CP4X1_HUMAN2.493e-2132.70Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2... [more]
CP4B1_RAT2.493e-2131.50Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1... [more]
CP9E2_BLAGE3.256e-2133.15Cytochrome P450 9e2 OS=Blattella germanica GN=CYP9... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ae02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ae02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290934 ID=CB290934; Name=CB290934; organism=Citrus sinensis; type=EST; length=851bp
TTTATTTTTTTTTTAGCACCAAATATTGTACAATATTATTATACTACAGT
ACTAATGCAATACAGTATAATACAATACAATGTGCCAAACGCACCCTAAA
TACATTAAACTTCATTATAAAAAAGTCTACATTGGCATCATGCTCATCTT
ATAGTTGCCGGTATTAATTATTTTTGCACCATAGTTTCCGTAGAATCAAT
TGGGTACCCAGTTCCGGATGAAGGGTTGGAACCGCCGTTGGAGCATGGAC
ATAGGATGGAGACAACTCGAATGAGTAGTTTTGAAGAATCATTGTCGTGG
CCATTTTTGCTTCTACTAAAGCAAAATTTTGTCCAACACATATCCTAGGA
CCCAATGCGAATGGGAAATATGAAACTTGATTTTTCGCCGCCTTTGAAAT
TCCTTCCGCAAACCTTTCCGGCTTAAACTCAACTGCATCGTCACCCCAAA
GTTCAGGATCCTGGTGAACTAGGATCATTGGCAAGCCAATTTGAACCCCA
GCGGGTAATGTCAAGTTTCCGAGTTTCGTTTCCTTAAGAACAGCTCGACT
AAGCATAGTTACGGGCGGATAAAGCCTGAGTACCTCATAAAGTATCATCT
GGACAATTTTGAGGTGATTCAATCCATCATAGTCGGGCTTATTATTGCCA
AACACTTGCAAAACCTCTTGCCTTGCACGTTCTTGCCAATCTTGATGCTT
GCTCAATAAGACCATCGTCCAATTAAGCAAAACAGAGGTAGTCTCTTGGC
CGGCAAAGTAAAATAGCTTACACTCTTCGATCACATCGTTCATGCTGAAC
CCAACATTTTTGTTATTTCCATGTTCTTCAATCTCTCTAAAACTGGTTTC
C
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