CB290936

Overview
NameCB290936
Unique NameCB290936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: BETB_ECOL6 (Betaine aldehyde dehydrogenase OS=Escherichia coli O6 GN=betB PE=3 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 69/185 (37.30%), Postives = 101/185 (54.59%), Query Frame = -3
Query:  138 FEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLL----TXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIFNF 680
            FE+K++ + +    GD FDP    GP V     D +  +I  GK EGA +L                + P +F + S+DM I ++EIFGPVM+++ +++  E I+ AN+T YGLAAGI+T  L   + V   + AGI WIN +     + P GGYK SG GR+ G+    +Y QVKS+   +  F
Sbjct:  302 FEQKVLARVERIRAGDVFDPQTNFGPLVSFPHRDNVLRYIAKGKEEGARVLCGGNVLKGDSFDNGAWVAPTVFTDCSDDMTIVREEIFGPVMSILTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEIPVGGYKHSGIGRENGVMTLQSYTQVKSIQVEMAKF 486          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: BETB_BURXL (Betaine aldehyde dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=betB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 70/183 (38.25%), Postives = 99/183 (54.10%), Query Frame = -3
Query:  159 GIFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXI----EPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSV 695
            G+ + FE  ++E+ K   VG P + A   GP     Q  ++  +IE GK+EGA L+                 EP +F    +DM I ++EIFGPVM+++ F    EAI  AN T YGLAAG++T  L   + V   + AGI WIN +     + P GGYK+SG GR+ GL    +Y ++KSV
Sbjct:  296 GVLERFEALVLERVKRIRVGAPTNAATNFGPLASAAQLQKVLGYIESGKQEGARLMAGGKRLTEGHFGNGQYVEPTVFTGCHDDMRIVREEIFGPVMSILVFDDEDEAIARANRTAYGLAAGVVTGNLARAHRVIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLEHYTRIKSV 478          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: BETB_BURA4 (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=betB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 68/180 (37.78%), Postives = 100/180 (55.56%), Query Frame = -3
Query:  159 DEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXI----EPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSV 686
            D F ++++E+ K   VG P D     GP V   Q D++  FI+ GK EGA LL                  P +F +  +DM I ++EIFGPVM+++ F++  E I  AN+T YGLAAG++T+ L   +     + AGI WIN +     + P GGYK+SG GR+ G+    +Y ++KSV
Sbjct:  299 DAFTQRVLERVKRIRVGKPTDADTNFGPLVSAAQLDKVLGFIDSGKAEGAKLLAGGTRLTDGHFGSGQYVAPTVFGDCRDDMKIVREEIFGPVMSILDFESEDEVIARANDTHYGLAAGVVTENLSRAHRTIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGITTLEHYTRIKSV 478          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: BETB_VIBPA (Betaine aldehyde dehydrogenase OS=Vibrio parahaemolyticus GN=betB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 69/189 (36.51%), Postives = 102/189 (53.97%), Query Frame = -3
Query:  138 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXI----EPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIFNF 692
            I+D+F  +L  + +  VVGDP D   + G  + K+   ++   IE  K  GA LLT                 P +F +  + M   ++EIFGPVM+++KF    E I+ AN+T YGLAAG+ T+ L   + V   I AGI W+N +     + P GGYK+SG GR+ G+E   +Y Q KSV+  + +F
Sbjct:  293 IYDDFVAQLKTRTEKLVVGDPLDENTQIGALISKEHESKVLSAIESAKASGATLLTGGYKVTDNGLQNGNFVAPTVFIDCDDSMSHVQQEIFGPVMSVLKFSEEAEVIERANDTDYGLAAGVFTQNLSRAHRVIHKIQAGICWVNAWGDSPAEMPVGGYKQSGIGRENGVETLKHYTQTKSVLVQLSDF 481          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: BETB_RHIEC (Betaine aldehyde dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 66/178 (37.08%), Postives = 103/178 (57.87%), Query Frame = -3
Query:  159 EFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXI---EPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSV 683
            EF K+L  + +A ++GDP D A + GP V   Q +++  +IE GK EGA L+                +P +F +V++DM IA++EIFGPVM+++ F    E I  AN +++GL+ G+ T  L   + V   + AG +WIN +     + PFGG K+SGFGR+  L    +Y ++K+V
Sbjct:  299 EFLKRLKARTEAMLIGDPLDEATQIGPMVSWAQREKVIAYIEKGKAEGATLVAGGGIPNNVSGEGYYVQPTVFADVTDDMTIAREEIFGPVMSVLDFDDEDEVITRANASEFGLSGGVFTADLSRAHRVVDRLEAGTLWINTYNLCPVEIPFGGSKQSGFGRENSLAALEHYSELKTV 476          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: BETB_PSEPF (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=betB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 68/178 (38.20%), Postives = 100/178 (56.18%), Query Frame = -3
Query:  159 FEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXI----EPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSV 680
            FE K+VE+     VG+P D     GP V     + +  +I  GK EGA +L                  P +F + ++DM I ++EIFGPVMA++ ++T  E I+ AN+T +GLAAGI+T+ L   + V   + AGI WIN +   D   P GGYK+SG GR+ G+   +N+ ++KSV
Sbjct:  302 FEAKIVERVARIRVGNPEDENTNFGPLVSFPHMESVLGYIAKGKEEGARVLCGGERLTDGEFAKGAFVAPTVFTDCTDDMTIVREEIFGPVMAILSYETEEEVIRRANDTDFGLAAGIVTRDLNRAHRVIHQLEAGICWINAWGESDAKMPVGGYKQSGVGRENGISSLNNFTRIKSV 479          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: BETB_PECCP (Betaine aldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=betB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 67/186 (36.02%), Postives = 104/186 (55.91%), Query Frame = -3
Query:  138 EFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXI----EPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIFNF 683
            +FE+K++ + +   +G+P D AV  GP V     + +  +IE GKREGA +L                  P +F +  +DM I ++EIFGPVM+++ ++   E I+ AN+++YGLAAG++T  L   + V   + AGI WIN +     + P GGYK SG GR+ G+    +Y Q+KSV   +  F
Sbjct:  301 QFEEKILARVQRIRIGNPTDEAVNFGPLVSFPHRESVLRYIESGKREGARVLVGGEPMTDEKYAQGAFVAPTVFTDCRDDMKIVREEIFGPVMSILTYQNEDEVIRRANDSEYGLAAGVVTGDLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGVGRENGITTLEHYTQIKSVQVELGEF 486          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: BETB_ERWCT (Betaine aldehyde dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=betB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 68/186 (36.56%), Postives = 103/186 (55.38%), Query Frame = -3
Query:  138 EFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXI----EPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIFNF 683
            +FE+K++   +    GDP D +V  GP V     + +  +IE GKREGA +L                  P +F +  +DM I +KEIFGPVM+++ ++   E I+ AN+++YGLAAGI+T+ L   + V   + AGI WIN +     + P GGYK SG GR+ G+    +Y Q+KS+   +  F
Sbjct:  301 QFEEKILACVQRIRAGDPTDESVNFGPLVSFPHRESVLRYIESGKREGARVLVGGEPMTDGDYAQGAYVAPTVFTDCRDDMKIVRKEIFGPVMSILTYQDEDEVIRRANDSEYGLAAGIVTRDLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGVGRENGVTTLEHYTQIKSIQVELGEF 486          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 70/182 (38.46%), Postives = 99/182 (54.40%), Query Frame = -3
Query:  159 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXI----EPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSV 692
            I D F  K++E+ K   VG P D     GP V   Q D++  FI  GK EGA LL                  P +F +  +DM I ++EIFGPVM+++ F++  E I  AN+T YGLAAG++T+ L   +     + AGI WIN +     + P GGYK+SG GR+ G+    +Y ++KSV
Sbjct:  297 IKDAFTAKVLERVKRIRVGKPTDADTNFGPLVSAAQLDKVLGFIASGKAEGAKLLAGGTRLTDGHFADGQYVAPTVFGDCRDDMKIVREEIFGPVMSILDFESEDEVIARANDTHYGLAAGVVTENLSRAHRTIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGITTLEHYTRIKSV 478          
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: BETB_PSEMY (Betaine aldehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28
Identity = 68/178 (38.20%), Postives = 100/178 (56.18%), Query Frame = -3
Query:  159 FEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXI----EPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWINCFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSV 680
            FE K++E+ K   +GDP D A   GP V     + +  +IE G+ EGA LL                  P +F +  +DM I ++EIFGPVM+++ + +  E I+ AN+T YGLAAG++T+ L   + V   + AGI WIN +     + P GGYK+SG GR+ GL    +Y ++KSV
Sbjct:  302 FEAKVLERVKRIRLGDPLDDATNFGPLVSYAHMESVLGYIEKGRSEGARLLIGGTRVSDGDYAKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILIYDSEEEVIRRANDTDYGLAAGVVTRDLNRAHRVIHKLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLVTLGHYTRIKSV 479          
The following BLAST results are available for this feature:
BLAST of CB290936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
BETB_ECOL61.507e-2837.30Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_BURXL1.507e-2838.25Betaine aldehyde dehydrogenase OS=Burkholderia xen... [more]
BETB_BURA41.507e-2837.78Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
BETB_VIBPA1.968e-2836.51Betaine aldehyde dehydrogenase OS=Vibrio parahaemo... [more]
BETB_RHIEC1.968e-2837.08Betaine aldehyde dehydrogenase OS=Rhizobium etli (... [more]
BETB_PSEPF1.968e-2838.20Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_PECCP1.968e-2836.02Betaine aldehyde dehydrogenase OS=Pectobacterium c... [more]
BETB_ERWCT1.968e-2836.56Betaine aldehyde dehydrogenase OS=Erwinia carotovo... [more]
BETB_BURVG1.968e-2838.46Betaine aldehyde dehydrogenase OS=Burkholderia vie... [more]
BETB_PSEMY2.570e-2838.20Betaine aldehyde dehydrogenase OS=Pseudomonas mend... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ae03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ae03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290936 ID=CB290936; Name=CB290936; organism=Citrus sinensis; type=EST; length=697bp
AATACAAAAACCCTTGTATTTTATGAAAGCCTTTAAATGAAAATAATTTG
CAAACCCCAAACTCAAAAAGTCTTGCAATTTTAATCAGCCACCACTTATT
TTTTCAAACCGGGGGGGGGAAGGGTTCCCACCCAAGGAAAATTGAAAATG
GGAGTCACAACGGACTTGACCTGCAAATAGTTATGAAAAAATTCCAGTCC
ACAGTCTCTACCAAATCCACTCTTTTTGTATCCTCCGAAAGGGCAGTCCC
TGTCAAAAGCAAAAAAACAATTGATCCATATAATGCCTGCTCAAATTGAT
CTAAAAACGGTATTACCCACTTTCAGGGCCTTTGTCATAATGCCTGCTGC
TAGGCCATATTGGGTATTATTTGCACTCTTAATTGCCTCCCCAACAGTCT
TGAATTTCATCAAGGCCATCACAGGGCCAAAAATTTCTTTCTTTGCTATC
AGCATGTCTTCCGAAACATTTGGGAAAATTGGAGGCTCAATATAATACCC
CTTCTTGCCAATAGGCTTACCCCCTGTTAACAAGGGGGCTCCTTCCCTCT
TGCCATGCTCAATGAACAAAAAAATTCTATCAAACTGCTTCTTATCAACC
TGGGGTCCTTGACGAACTGCAGGATCAAAAGGATCCCCAACTACCCAAGC
TTTTGCCTTTTCGACCAACTTCTTTTCAAATTCATCAAAAATTCCTT
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