CB290936

Overview
NameCB290936
Unique NameCB290936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: ROCA_STAAW (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=rocA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = -3 
Query:  144 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWIN--CFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIF 692
            ++DE  +K ++  K   +G+  D     GP ++KKQFD+I  +IE GK EG  L             +EP I   +     I ++EIFGPV+  +K     EAI+ AN+T YGL   ++T   +           G +++N  C  A     PFGG+K SG     G   +  +   + VV+ +F
Sbjct:  332 VYDEVLEKSIKLTKELTLGNTVDNTY-MGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF 514
[Close]
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: ROCA_STAAT (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rocA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = -3 
Query:  144 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWIN--CFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIF 692
            ++DE  +K ++  K   +G+  D     GP ++KKQFD+I  +IE GK EG  L             +EP I   +     I ++EIFGPV+  +K     EAI+ AN+T YGL   ++T   +           G +++N  C  A     PFGG+K SG     G   +  +   + VV+ +F
Sbjct:  332 VYDEVLEKSIKLTKELTLGNTVDNTY-MGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF 514
[Close]
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: ROCA_STAAS (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=rocA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = -3 
Query:  144 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWIN--CFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIF 692
            ++DE  +K ++  K   +G+  D     GP ++KKQFD+I  +IE GK EG  L             +EP I   +     I ++EIFGPV+  +K     EAI+ AN+T YGL   ++T   +           G +++N  C  A     PFGG+K SG     G   +  +   + VV+ +F
Sbjct:  332 VYDEVLEKSIKLTKELTLGNTVDNTY-MGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF 514
[Close]
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: ROCA_STAAR (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=rocA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = -3 
Query:  144 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWIN--CFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIF 692
            ++DE  +K ++  K   +G+  D     GP ++KKQFD+I  +IE GK EG  L             +EP I   +     I ++EIFGPV+  +K     EAI+ AN+T YGL   ++T   +           G +++N  C  A     PFGG+K SG     G   +  +   + VV+ +F
Sbjct:  332 VYDEVLEKSIKLTKELTLGNTVDNTY-MGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF 514
[Close]
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: ROCA_STAAN (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=rocA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = -3 
Query:  144 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWIN--CFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIF 692
            ++DE  +K ++  K   +G+  D     GP ++KKQFD+I  +IE GK EG  L             +EP I   +     I ++EIFGPV+  +K     EAI+ AN+T YGL   ++T   +           G +++N  C  A     PFGG+K SG     G   +  +   + VV+ +F
Sbjct:  332 VYDEVLEKSIKLTKELTLGNTVDNTY-MGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF 514
[Close]
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: ROCA_STAAM (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rocA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = -3 
Query:  144 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWIN--CFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIF 692
            ++DE  +K ++  K   +G+  D     GP ++KKQFD+I  +IE GK EG  L             +EP I   +     I ++EIFGPV+  +K     EAI+ AN+T YGL   ++T   +           G +++N  C  A     PFGG+K SG     G   +  +   + VV+ +F
Sbjct:  332 VYDEVLEKSIKLTKELTLGNTVDNTY-MGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF 514
[Close]
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: ROCA_STAAE (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Newman) GN=rocA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = -3 
Query:  144 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWIN--CFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIF 692
            ++DE  +K ++  K   +G+  D     GP ++KKQFD+I  +IE GK EG  L             +EP I   +     I ++EIFGPV+  +K     EAI+ AN+T YGL   ++T   +           G +++N  C  A     PFGG+K SG     G   +  +   + VV+ +F
Sbjct:  332 VYDEVLEKSIKLTKELTLGNTVDNTY-MGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF 514
[Close]
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: ROCA_STAAC (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain COL) GN=rocA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = -3 
Query:  144 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWIN--CFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIF 692
            ++DE  +K ++  K   +G+  D     GP ++KKQFD+I  +IE GK EG  L             +EP I   +     I ++EIFGPV+  +K     EAI+ AN+T YGL   ++T   +           G +++N  C  A     PFGG+K SG     G   +  +   + VV+ +F
Sbjct:  332 VYDEVLEKSIKLTKELTLGNTVDNTY-MGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF 514
[Close]
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: ROCA_STAAB (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rocA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = -3 
Query:  144 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWIN--CFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIF 692
            ++DE  +K ++  K   +G+  D     GP ++KKQFD+I  +IE GK EG  L             +EP I   +     I ++EIFGPV+  +K     EAI+ AN+T YGL   ++T   +           G +++N  C  A     PFGG+K SG     G   +  +   + VV+ +F
Sbjct:  332 VYDEVLEKSIKLTKELTLGNTVDNTY-MGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF 514
[Close]
BLAST of CB290936 vs. ExPASy Swiss-Prot
Match: ROCA_STAA9 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain JH9) GN=rocA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 57/185 (30.81%), Postives = 88/185 (47.57%), Query Frame = -3 
Query:  144 IFDEFEKKLVEKAKAWVVGDPFDPAVRQGPQVDKKQFDRIFLFIEHGKREGAPLLTXXXXXXXXXXXIEPPIFPNVSEDMLIAKKEIFGPVMALMKFKTVGEAIKSANNTQYGLAAGIMTKALKVGNTVFRSI*AGIIWIN--CFFAFDRDCPFGGYKKSGFGRDCGLEFFHNYLQVKSVVTPIF 692
            ++DE  +K ++  K   +G+  D     GP ++KKQFD+I  +IE GK EG  L             +EP I   +     I ++EIFGPV+  +K     EAI+ AN+T YGL   ++T   +           G +++N  C  A     PFGG+K SG     G   +  +   + VV+ +F
Sbjct:  332 VYDEVLEKSIKLTKELTLGNTVDNTY-MGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNREHWIKAVNEFDVGNLYLNRGCTSAVVGYHPFGGFKMSGTDAKTGSPDYLLHFLEQKVVSEMF 514
The following BLAST results are available for this feature:
BLAST of CB290936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
ROCA_STAAW7.259e-1530.811-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAT7.259e-1530.811-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAS7.259e-1530.811-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAR7.259e-1530.811-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAN7.259e-1530.811-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAM7.259e-1530.811-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAE7.259e-1530.811-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAC7.259e-1530.811-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAB7.259e-1530.811-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA97.259e-1530.811-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02ae03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ae03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290936 ID=CB290936; Name=CB290936; organism=Citrus sinensis; type=EST; length=697bp
AATACAAAAACCCTTGTATTTTATGAAAGCCTTTAAATGAAAATAATTTG
CAAACCCCAAACTCAAAAAGTCTTGCAATTTTAATCAGCCACCACTTATT
TTTTCAAACCGGGGGGGGGAAGGGTTCCCACCCAAGGAAAATTGAAAATG
GGAGTCACAACGGACTTGACCTGCAAATAGTTATGAAAAAATTCCAGTCC
ACAGTCTCTACCAAATCCACTCTTTTTGTATCCTCCGAAAGGGCAGTCCC
TGTCAAAAGCAAAAAAACAATTGATCCATATAATGCCTGCTCAAATTGAT
CTAAAAACGGTATTACCCACTTTCAGGGCCTTTGTCATAATGCCTGCTGC
TAGGCCATATTGGGTATTATTTGCACTCTTAATTGCCTCCCCAACAGTCT
TGAATTTCATCAAGGCCATCACAGGGCCAAAAATTTCTTTCTTTGCTATC
AGCATGTCTTCCGAAACATTTGGGAAAATTGGAGGCTCAATATAATACCC
CTTCTTGCCAATAGGCTTACCCCCTGTTAACAAGGGGGCTCCTTCCCTCT
TGCCATGCTCAATGAACAAAAAAATTCTATCAAACTGCTTCTTATCAACC
TGGGGTCCTTGACGAACTGCAGGATCAAAAGGATCCCCAACTACCCAAGC
TTTTGCCTTTTCGACCAACTTCTTTTCAAATTCATCAAAAATTCCTT
back to top