CB290955

Overview
NameCB290955
Unique NameCB290955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.708e-28
Identity = 59/139 (42.45%), Postives = 91/139 (65.47%), Query Frame = -3
Query:  107 DNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGM-ISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKS--TTLYGSSPIFFLTPSGTLRPINIELTPPP 514
            + +  ++ P  +  D+F W RD EF RQ L G+NP +I L+ E P++S LD  +YGP ES +T E+I +E+     ++E+A+++K+LF +DYHD+ LP+VEK+  +K      Y S  IFF + +G LRP+ IEL+ PP
Sbjct:  395 ETLLKYDTPAVIKWDRFAWLRDNEFGRQALAGVNPVNIELLKELPIRSNLDPALYGPQESVLTEEIIAREVEHYGTTIEKALEEKRLFLVDYHDILLPFVEKINSIKEDPRKTYASRTIFFYSKNGALRPLAIELSLPP 533          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.207e-27
Identity = 72/202 (35.64%), Postives = 105/202 (51.98%), Query Frame = -3
Query:   50 LGFPYLCGIDALFNEGVNFPPLKQ*GFWNTL--LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQW--KQVFLPSWHSTE 643
            L F     +  L+  GV  P      F + +  +P + +     G+    + PP  M  DK  W  DEEF R+T+ GLNP  I++I E PL S LD + YG     I  E +   +GG ++VE+AI+ KKLF LD+HD  +PY+ K+    +T  Y +  IFFL   GTL P+ IEL+ P   G+      +V++P+    E
Sbjct:  294 LEFDNFAEVHKLYEGGVTLPT----NFLSKIAPIPVIKEIFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDHTCIIAKEHLEPNLGG-LTVEQAIQNKKLFILDHHDYLIPYLRKI-NANTTKTYATRTIFFLKDDGTLTPLAIELSKPHPQGEEYGPVSEVYVPASEGVE 489          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.176e-27
Identity = 62/151 (41.06%), Postives = 87/151 (57.62%), Query Frame = -3
Query:   98 LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNG 550
            LP L +     G+N+  F PP      K  W  DEEF R+ + G+NP  IR + E P KSTLD  +YG   S IT E +   +GG ++VEEA+  ++LF LDY D F+PY+ ++  L +   Y +  I FL   GTL+P+ IEL+ P  +G
Sbjct:  334 LPALKEIFRTDGENVLQFPPPHVAKVSKSGWMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGG-VTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDG 483          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 62/162 (38.27%), Postives = 93/162 (57.41%), Query Frame = -3
Query:   65 LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQWKQVFLPS 550
            +P L + +   G+ +  F PP  +   K  W  DEEF R+ L G+NP  I+ + E P KS LD+ +YG   S +T E +   +GG+ +VEEA+   +LF LD+HD F+PY+E++  L +   Y +  I FL    TL+P+ IEL+ P   GK    +V LP+
Sbjct:  333 IPVLKEILRTDGEQVLKFPPPHVIRVTKSAWMTDEEFGREMLAGVNPCLIQRLQEFPPKSKLDVTVYGDQTSTMTKEHLEINLGGL-TVEEALHGNRLFILDHHDAFIPYLERINDLPTAKCYATRTILFLKDDNTLKPLAIELSLPNPGGKGANSRVILPA 493          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.015e-25
Identity = 71/202 (35.15%), Postives = 106/202 (52.48%), Query Frame = -3
Query:   50 LGFPYLCGIDALFNEGVNFPPLKQ*GFWNTLLP-RLVKAI-EDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQW--KQVFLPSWHSTE 643
            L F     +  L+  GV  P      F +   P  +VK I    G+    + PP  M  +K  W  DEEF R+T+ G+NP  I+ + E P +S LD + +G   S IT E +   +GG ++VE+AI+ KKLF LD+HD  +PY+ ++    +T  Y +  IFFL   GTL P+ IEL+ P   G       +V++P++   E
Sbjct:  188 LEFDNFAEVHKLYEGGVTLPT----NFLSKYAPIPIVKEIFRSDGEQFLKYPPPKVMQVNKSAWMTDEEFARETIAGVNPNVIKSLEEFPPRSKLDTQSFGDHTSIITKEHLEINLGG-LTVEQAIQSKKLFILDHHDYLIPYLRRI-NASATKTYATRTIFFLKSDGTLAPLAIELSKPHPQGDEHGPVSEVYVPAYEGVE 383          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.496e-24
Identity = 66/169 (39.05%), Postives = 92/169 (54.44%), Query Frame = -3
Query:   50 LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQ--WKQVFLPSWHSTE 550
            LP L +     G+    F PP  +   K  W  DEEF R+ L G+NP  IR + E P +S LD ++YG   S IT E +   + G ++V+EAI+ K+LF L +HD  +PY+ ++    ST  Y +  I FL   GTLRP+ IEL+ P   G     + QVFLP+    E
Sbjct:  328 LPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKEFPPRSKLDSQVYGDHTSQITKEHLEPNLEG-LTVDEAIQNKRLFLLGHHDPIMPYLRRI-NATSTKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVE 494          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.333e-24
Identity = 57/142 (40.14%), Postives = 84/142 (59.15%), Query Frame = -3
Query:   95 SGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGK 520
            +GD +     P  +  DKF W  DEEF R+ L G+NP  I+ +T  P KSTLD  +YG   S IT   I   + G+ +V+ A+K  +LF LD+HD F+P+++K+ +L    +Y S  I  L   GTL+P+ IEL+ P  +G+
Sbjct:  347 AGDQVLKLPLPHVIKEDKFAWRTDEEFAREMLAGVNPVMIKRLTNFPAKSTLDPNVYGDHTSKITEAHIKHNMEGL-TVQNALKGNRLFILDHHDHFMPFLDKINKLDGNFIYASRTILLLKDDGTLKPLAIELSLPHPDGQ 487          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 64/169 (37.87%), Postives = 92/169 (54.44%), Query Frame = -3
Query:   50 LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNG--KPQWKQVFLPSWHSTE 550
            LP + +     G +I  F  P  +   +  W  DEEF R+ + G+NP  IR + E P KS LD  IYG   S IT + +  ++ G  +++EA+  ++LF LDYHD+F+PYV ++ QL S   Y +  I FL   GTL+P+ IEL+ P   G       QV LP+    E
Sbjct:  310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSL--DLDGY-TMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVE 475          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 67/173 (38.73%), Postives = 93/173 (53.76%), Query Frame = -3
Query:   98 LFNEGVNFP--PLKQ*GFWNTLLPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNG 610
            ++ EG++ P   L      N  L  L +     G     F  P  +  DK  W  DEEF R+ L GLNP  I+L+ E P KS LD E YG   S IT   I   + G ++VEEA+++++LF LD+HD  +PY+ +V    +T  Y S  + FL   GTL+P+ IEL+ P  NG
Sbjct:  308 IYEEGIDLPNQALIDSIVKNIPLEMLKEIFRTDGQKFLKFPVPQVIKEDKTAWRTDEEFAREMLAGLNPVVIQLLKEFPPKSKLDSESYGNQNSTITKSHIEHNLDG-LTVEEALEKERLFILDHHDTLMPYLGRV-NTTTTKTYASRTLLFLKDDGTLKPLVIELSLPHPNG 478          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.686e-23
Identity = 63/169 (37.28%), Postives = 93/169 (55.03%), Query Frame = -3
Query:   50 LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNG--KPQWKQVFLPSWHSTE 550
            LP + +     G+ +  F PP  +   K  W  DEEF R+ + G+NP  IR + E P KS LD  IYG   S IT + +  ++ G  +V+EA+  ++LF LDYHD+F+PY+ ++ Q  +   Y +  I FL  +GTL+P+ IEL+ P   G       QV LP+    E
Sbjct:  339 LPVVKELFRTDGEQVLKFPPPHVIQVSKSAWMTDEEFAREMVAGVNPCVIRGLQEFPPKSNLDPTIYGEQTSKITADAL--DLDG-YTVDEALASRRLFMLDYHDVFMPYIRRINQTYAKA-YATRTILFLRENGTLKPVAIELSLPHPAGDLSGAVSQVILPAKEGVE 503          
The following BLAST results are available for this feature:
BLAST of CB290955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX6_ARATH1.708e-2842.45Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_SOYBN4.207e-2735.64Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOXX_SOYBN7.176e-2741.06Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOXA_PHAVU2.088e-2638.27Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOXB_PHAVU3.015e-2535.15Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOX3_SOYBN1.496e-2439.05Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX4_ORYSJ3.333e-2440.14Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX1_SOYBN5.686e-2437.87Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX1_ARATH1.267e-2338.73Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX2_SOYBN3.686e-2337.28Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02af02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02af02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290955 ID=CB290955; Name=CB290955; organism=Citrus sinensis; type=EST; length=645bp
CAGCATGATGAGCAAGGACATGAGCTTTTGCTAACTTCCAAAGCCAGCAC
TCAGTAGAGTGCCAAGAAGGTAAAAACACTTGTTTCCATTGTGGCTTGCC
ATTCATTGGAGGCGGAGTGAGCTCAATATTTATTGGTCTCAATGTGCCGG
ATGGTGTTAGGAAAAAAATTGGGCTAGATCCATACAAAGTTGTGCTTTTG
AGTTGTCTCACTTTTTCCACATATGGTAAAAATAGGTCATGGTAATCTAA
AAAGAACAACTTCTTTTGTTTTATAGCCTCTTCAACAGAAATCATTCCTC
CAATTTCTTTTAAAATCAATTCTGGGGTAATTGCTGATTCTGGTGGGCCG
TAAATTTCAAGATCGAGGGTGCTTTTCAACGGCGATTCCGTGATCAACCT
TATGCTATACGGGTTGAGACCATCAAGAGTTTGCCTAAAAAATTCCTCAT
CCCTAAACCAAAAAAATTTGTCTCTGTCCATTGTTACAGGCGGCTCAAAC
AGAAAAATATTATCTCCTGAATCCTCAATTGCCTTAACCAATCTGGGAAG
CAGGGTGTTCCAAAAACCTTACTGTTTGAGTGGAGGAAAGTTGACTCCTT
CATTGAAGAGTGCGTCAATACCACATAAGTATGGAAACCCCAAAT
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