CB290955

Overview
NameCB290955
Unique NameCB290955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.389e-22
Identity = 58/169 (34.32%), Postives = 91/169 (53.85%), Query Frame = -3
Query:   50 LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKP--QWKQVFLPSWHSTE 550
            +P   +     G+    F PP  +  D   W  DEEF R+ + G+NP+ I+ +   P+KS LD ++YG   S IT E +   +GG ++VE AI+  +LF  D+HD   PY+ K+    +T  Y +  + FL  +GTL+P+ IEL+ P  +G       +V+LP+    E
Sbjct:  336 IPLFSELFRSDGEAALKFPPPKVIQVDHSAWMTDEEFAREMIAGVNPHIIKEVLSFPIKSKLDSQLYGDNTSKITKEHLEPNLGG-VTVEGAIQTNRLFTPDHHDALFPYLRKI-NATATKAYATRTVLFLQDNGTLKPLAIELSTPHPDGDSFGPVSKVYLPASEGVE 502          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.186e-21
Identity = 56/151 (37.09%), Postives = 87/151 (57.62%), Query Frame = -3
Query:   98 LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNG 550
            L  + + +   G+ I  F  P+ +   K  W  DEEF R+ L G+NP  I  + E P KS LD E+YG   S IT E I  ++ G ++++EAI   KLF L++HD+ +PY+ ++    +T  Y S  + FL  +G+L+P+ IEL+ P  +G
Sbjct:  331 LEMIRELLRTDGEGILRFPTPLVIKDSKTAWRTDEEFAREMLAGVNPVIISRLEEFPPKSKLDPELYGNQNSTITAEHIEGKLDG-LTIDEAINSNKLFILNHHDVLIPYLRRI-NTTTTKTYASRTLLFLQDNGSLKPLAIELSLPHPDG 479          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.186e-21
Identity = 58/151 (38.41%), Postives = 84/151 (55.63%), Query Frame = -3
Query:   98 LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNG 550
            LP L +     G+N   + PP  +   +  W  DEEF R+ L G+NP  I  + E P +S LD +IYG   S I+ E +   + G ++VEEAI+ KKLF LD+HD  +PY+ ++    ST  Y +  I FL  +  L+P+ IEL+ P   G
Sbjct:  332 LPVLKEIFRTDGENTLKYPPPKVIQVSRSGWMTDEEFAREMLAGVNPNVICCLQEFPPRSKLDSQIYGDHTSKISKEHLEPNLEG-LTVEEAIQNKKLFLLDHHDSIMPYLRRINS-TSTKAYATRTILFLNNNQNLKPLAIELSLPHPQG 480          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.022e-21
Identity = 55/140 (39.29%), Postives = 79/140 (56.43%), Query Frame = -3
Query:   98 GDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNG 517
            G  +  F  P  +  ++  W  DEEF R+ L GLNP  IR +TE P KSTLD   YG   S ITP  I K + G +SV++A+   +L+ LD+HD F+P++  +  L     Y +  + FL    TL+P+ IEL+ P + G
Sbjct:  338 GSYLLKFPKPDIIKENEVAWRTDEEFAREILAGLNPMVIRRLTEFPPKSTLDPSKYGDQTSTITPAHIEKNLEG-LSVQQALDSNRLYILDHHDHFMPFLIDINSLDGIFTYATRTLLFLRDDDTLKPLAIELSLPHIEG 476          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = -3
Query:   98 IEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNG 529
            ++  G  +  +  P  +  DK  W  DEEF R+ L G NP  I  + E P KS LD  IYG   S IT E +  ++ G+ +V EAIK  +LF L++HD+ +P + K+    +T  Y S  + FL    TL+P+ IEL+ P  +G
Sbjct:  337 LQTDGQGLLKYPTPQVIQGDKTAWRTDEEFGREMLAGSNPVLISRLQEFPPKSKLDPTIYGNQNSTITTEHVQDKLNGL-TVNEAIKSNRLFILNHHDIVMPLLRKINMSANTKAYASRTLLFLQDDRTLKPLAIELSLPHPDG 479          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 53/140 (37.86%), Postives = 81/140 (57.86%), Query Frame = -3
Query:   98 GDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNG 517
            GD++     P  +  +K  W  DEEF R+ L G+NP  I  +TE P KS+LD   +G   S IT E I K + G+ +V++A++  +L+ LD+HD F+P++  V  L    +Y +  +FFL   G L P+ IEL+ P + G
Sbjct:  336 GDSLLKLPVPHIIQENKQAWRTDEEFAREVLAGVNPVMITRLTEFPPKSSLDPSKFGDHTSTITAEHIEKNLEGL-TVQQALESNRLYILDHHDRFMPFLIDVNNLPGNFIYATRTLFFLRGDGRLTPLAIELSEPIIQG 474          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = -3
Query:   98 SGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNG 520
            +GD I     P  + +DK  W  DEEF R+ L G+NP  I  +TE P KS+LD   +G   S IT   I   + G+ +V++A+   +L+ LD+HD F+P++  V  L+   +Y +  +FFL   GTL P+ IEL+ P + G
Sbjct:  340 AGDYILKLPMPQIIKQDKEAWRTDEEFAREVLAGVNPMMITRLTEFPPKSSLDPSKFGDHTSMITAAHIGSNLEGL-TVQQALDSNRLYILDHHDRFMPFLIDVNGLEGNFIYATRTLFFLRGDGTLAPLAIELSEPMIQG 479          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = -3
Query:   98 LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNG 550
            L  + + +   G+ I  F  P+ +   K  W  DEEF R+ L G+NP  I  + E P KS LD E YG   S IT E I  ++ G ++V+EA+   KLF L++HD+ +PY+ ++     T  Y S  + FL  +G+L+P+ IEL+ P  +G
Sbjct:  332 LEMIRELLRTDGEGILRFPTPLVIKDSKTAWRTDEEFAREMLAGVNPVIISRLQEFPPKSKLDPEAYGNQNSTITAEHIEDKLDG-LTVDEAMNNNKLFILNHHDVIIPYLRRI-NTTITKAYASRTLLFLQDNGSLKPLAIELSFPHPDG 480          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.712e-20
Identity = 59/169 (34.91%), Postives = 91/169 (53.85%), Query Frame = -3
Query:   50 LPRLVKAIEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKPQW--KQVFLPSWHSTE 550
            LP + +     G+ +  F PP  +   K  W  DEEF R+ L G+NP  IR + E P KS LD   YG   S I+ +++   + G  +++EA+   +LF LDYHD F+P++ ++ +  S   Y +  I FL  +GTL+P+ IEL+ P  +G       +V LP+    E
Sbjct:  336 LPVVKEIFRTDGEQVLKFTPPHVIRVSKSAWMTDEEFAREMLAGVNPCMIRGLQEFPPKSNLDPAEYGDHTSKISVDVL--NLDG-CTIDEALASGRLFILDYHDTFIPFLRRINE-TSAKAYATRTILFLKENGTLKPVAIELSLPHPDGDKSGFVSKVILPADEGVE 500          
BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.472e-19
Identity = 55/162 (33.95%), Postives = 85/162 (52.47%), Query Frame = -3
Query:   50 IEDSGDNIFLFEPPVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPPPMNGKP--QWKQVFLPSWHSTE 529
            + + G+    +  P  +   +  W  DEEF R+ L GLNP  I  + E P KS LD   YG   S+I  E I   + G ++V+EA++Q KL+ LD+HD  +PY+ ++    + T Y +  +  L   GTL+P+ IEL+ P   G+      +VF P+    E
Sbjct:  359 VRNDGERFLKYPLPDILKESRSAWRTDEEFAREMLAGLNPVVISRLQEFPPKSCLDSAKYGNQHSSIRTEHIESNMNG-LNVQEALEQNKLYILDHHDALMPYLTRINSTNTKT-YATRTLLLLQADGTLKPLAIELSLPHAQGESYGSVSKVFTPAEKGVE 518          
The following BLAST results are available for this feature:
BLAST of CB290955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX1_LENCU2.389e-2234.32Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOXA_SOLLC1.186e-2137.09Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX3_PEA1.186e-2138.41Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX1_ORYSJ2.022e-2139.29Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOXB_SOLLC5.884e-2137.50Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX1_HORVU5.884e-2137.86Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX3_ORYSJ1.004e-2038.30Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX1_SOLTU1.004e-2037.09Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX2_PEA1.712e-2034.91Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX5_ARATH2.472e-1933.95Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02af02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02af02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290955 ID=CB290955; Name=CB290955; organism=Citrus sinensis; type=EST; length=645bp
CAGCATGATGAGCAAGGACATGAGCTTTTGCTAACTTCCAAAGCCAGCAC
TCAGTAGAGTGCCAAGAAGGTAAAAACACTTGTTTCCATTGTGGCTTGCC
ATTCATTGGAGGCGGAGTGAGCTCAATATTTATTGGTCTCAATGTGCCGG
ATGGTGTTAGGAAAAAAATTGGGCTAGATCCATACAAAGTTGTGCTTTTG
AGTTGTCTCACTTTTTCCACATATGGTAAAAATAGGTCATGGTAATCTAA
AAAGAACAACTTCTTTTGTTTTATAGCCTCTTCAACAGAAATCATTCCTC
CAATTTCTTTTAAAATCAATTCTGGGGTAATTGCTGATTCTGGTGGGCCG
TAAATTTCAAGATCGAGGGTGCTTTTCAACGGCGATTCCGTGATCAACCT
TATGCTATACGGGTTGAGACCATCAAGAGTTTGCCTAAAAAATTCCTCAT
CCCTAAACCAAAAAAATTTGTCTCTGTCCATTGTTACAGGCGGCTCAAAC
AGAAAAATATTATCTCCTGAATCCTCAATTGCCTTAACCAATCTGGGAAG
CAGGGTGTTCCAAAAACCTTACTGTTTGAGTGGAGGAAAGTTGACTCCTT
CATTGAAGAGTGCGTCAATACCACATAAGTATGGAAACCCCAAAT
back to top