CB290955

Overview
NameCB290955
Unique NameCB290955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB290955 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.089e-18
Identity = 53/146 (36.30%), Postives = 81/146 (55.48%), Query Frame = -3 
Query:  110 RLVKAIEDSGDNIFLFEP-PVTMDRDKFFWFRDEEFFRQTLDGLNPYSIRLITESPLKSTLDLEIYGPPESAITPELILKEIGGMISVEEAIKQKKLFFLDYHDLFLPYVEKVRQLKSTTLYGSSPIFFLTPSGTLRPINIELTPP 544
            +LVK +  +G +  L  P P  +  DK  W  D+EF R+ L G+NP  I  +TE P +S LD   YG   S IT   + + + G+ +V++AI    L+ +D+HD F+PY+  +  L    +Y +  + FL   GTL P+ IEL+ P
Sbjct:  328 QLVKDLIPAGGDYLLKLPMPHVIREDKKAWMTDDEFAREILAGVNPMVIARLTEFPPRSRLDPARYGDQTSTITAAHVERGLEGL-TVQQAIDGNLLYVVDHHDHFMPYLLDINSLDDNFIYATRTLLFLRGDGTLAPLAIELSLP 472
The following BLAST results are available for this feature:
BLAST of CB290955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX2_ORYSJ6.089e-1836.30Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02af02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02af02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290955 ID=CB290955; Name=CB290955; organism=Citrus sinensis; type=EST; length=645bp
CAGCATGATGAGCAAGGACATGAGCTTTTGCTAACTTCCAAAGCCAGCAC
TCAGTAGAGTGCCAAGAAGGTAAAAACACTTGTTTCCATTGTGGCTTGCC
ATTCATTGGAGGCGGAGTGAGCTCAATATTTATTGGTCTCAATGTGCCGG
ATGGTGTTAGGAAAAAAATTGGGCTAGATCCATACAAAGTTGTGCTTTTG
AGTTGTCTCACTTTTTCCACATATGGTAAAAATAGGTCATGGTAATCTAA
AAAGAACAACTTCTTTTGTTTTATAGCCTCTTCAACAGAAATCATTCCTC
CAATTTCTTTTAAAATCAATTCTGGGGTAATTGCTGATTCTGGTGGGCCG
TAAATTTCAAGATCGAGGGTGCTTTTCAACGGCGATTCCGTGATCAACCT
TATGCTATACGGGTTGAGACCATCAAGAGTTTGCCTAAAAAATTCCTCAT
CCCTAAACCAAAAAAATTTGTCTCTGTCCATTGTTACAGGCGGCTCAAAC
AGAAAAATATTATCTCCTGAATCCTCAATTGCCTTAACCAATCTGGGAAG
CAGGGTGTTCCAAAAACCTTACTGTTTGAGTGGAGGAAAGTTGACTCCTT
CATTGAAGAGTGCGTCAATACCACATAAGTATGGAAACCCCAAAT
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