CB290980

Overview
NameCB290980
Unique NameCB290980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_DROME (ATP synthase subunit O, mitochondrial OS=Drosophila melanogaster GN=Oscp PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 42/131 (32.06%), Postives = 68/131 (51.91%), Query Frame = 1
Query:  229 SSLQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            SS   +  VK P+ +FG  G YA+ALY AA K + L++ E ++  L    +      ++     +  +    A+ E   + +F+  T + L +LADNGRL+ LDT+   +  +  AH+GEV   V +  PL
Sbjct:   15 SSAAAQATVKPPVQVFGLEGRYATALYSAASKLSQLDQVEKDLTALQATIRSDKKLREYVTSPIINKKVMATALKEASEKLRFAPATVNLLGLLADNGRLKKLDTVINAYKTIMAAHRGEVVCEVVTAKPL 145          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_CALMO (ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  220 FSTSSLQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            FSTS ++   K V+ P+ ++G  G YA+ALY AA K   LE+ E E+L + +  K+            V    +V ++++I  + +FS +T + + +LA+NGRL N   +   F  +   H+GE+  TVT+  PL
Sbjct:   16 FSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSVKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPL 149          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_CALJA (ATP synthase subunit O, mitochondrial OS=Callithrix jacchus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.908e-13
Identity = 45/135 (33.33%), Postives = 73/135 (54.07%), Query Frame = 1
Query:  220 FSTSSLQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            F TS ++   K V+ P+ ++G  G YA+ALY AA K   LE+ E E+L + +  K+            V    +V ++++I  + +FS +T + + +LA+NGRL N   +   F  +   H+GEV  TVT+  PL
Sbjct:   16 FGTSVVRPFAKLVRPPVQVYGVEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSIKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTTASPL 149          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_NEUCR (ATP synthase subunit 5, mitochondrial OS=Neurospora crassa GN=atp-5 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 47/125 (37.60%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  250 KVKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVT-NHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            KVK P+ LFG  G YA+ALY AAVKT+ALE     I  L     K        +  ++    +   + E+      S+ T  +FL  LA+N RL  L ++  +F EL  A +GEV++ VTS  PL
Sbjct:   30 KVKPPVTLFGLDGTYATALYTAAVKTSALEPTAKAISSLGNLLAKDPKLASILETPTLSPADKSAIVAELQKSVGVSNETVKNFLATLAENNRLGLLPSVVAKFSELMSAARGEVEMVVTSAQPL 154          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_KLULA (ATP synthase subunit 5, mitochondrial OS=Kluyveromyces lactis GN=ATP5 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  253 VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            VK P+ LFG  G YA+AL+ AA KT ++E A S +  L E   K        ++ ++ AE R   ++ +  +        + L VLA+N RL  L+ +  +F +LT A+ G V+ TVT+  PL
Sbjct:   18 VKPPVQLFGLDGTYATALFTAASKTTSVEAAASSLNALKETVAKDTKLTSILENPALSAEDRNIVVDTLSKKINLDQSVQNLLKVLAENNRLSLLEHVTSQFSKLTDAYHGLVQATVTTAQPL 140          
BLAST of CB290980 vs. ExPASy Swiss-Prot
Match: ATPO_ASHGO (ATP synthase subunit 5, mitochondrial OS=Ashbya gossypii GN=ATP5 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 44/124 (35.48%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  253 VKVPLALFGGSGNYASALYIAAVKTNALEKAESEILDLDEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSD-VTNHFLVVLADNGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 621
            VK P+ LFG  G YASAL+ AA KT ++E A   +  L +   K         + ++PA  R   +  +  +    D    + + VLA+N RL  L  +A  F +LT AH G V+ TVT+  PL
Sbjct:   18 VKPPIQLFGLEGTYASALFTAASKTTSIESAGKALASLSKTIAKDAKLGAILANPALPAGDRTVVVQTLAQKTPGMDAAVQNLMQVLAENNRLNLLQGVAGEFTKLTDAHNGLVQATVTTAQPL 141          
The following BLAST results are available for this feature:
BLAST of CB290980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ATPO_DROME8.564e-1432.06ATP synthase subunit O, mitochondrial OS=Drosophil... [more]
ATPO_CALMO8.564e-1433.33ATP synthase subunit O, mitochondrial OS=Callicebu... [more]
ATPO_CALJA1.908e-1333.33ATP synthase subunit O, mitochondrial OS=Callithri... [more]
ATPO_NEUCR2.109e-1237.60ATP synthase subunit 5, mitochondrial OS=Neurospor... [more]
ATPO_KLULA4.699e-1234.96ATP synthase subunit 5, mitochondrial OS=Kluyverom... [more]
ATPO_ASHGO6.137e-1235.48ATP synthase subunit 5, mitochondrial OS=Ashbya go... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ag03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290980 ID=CB290980; Name=CB290980; organism=Citrus sinensis; type=EST; length=625bp
GTACTGAAGCAGCTCTCTCCAATTCACTATCCTCTGCTTCAAAGCCTTCC
CCCATATTCACTTCCCAAAAAAAAGAAATACCTGAACTGGGCATATTATG
GTTTTTAAATTTATGACATGGCAACGGTAAGTCCTATCAGATCGAGCCTC
TCTGTATTCAACAAGATTCTCAAATCCAATTCTCAGCTATCCCCTCTTCA
TCCACAGTTATCGAAAGGTTTTTCCACTTCGTCTTTGCAGAAGGAGCAGA
AAGTTAAGGTGCCCCTGGCTTTGTTTGGAGGTTCAGGAAATTATGCTTCT
GCTCTGTACATTGCGGCAGTGAAAACTAACGCACTGGAGAAGGCTGAGTC
TGAGATTCTTGACCTTGATGAGGCTTCAAAGAAGGCTGATACATATTTTC
AGTTCACAAAGGACTTGTCTGTGCCTGCAGAGACTAGAGTTAATGCCATT
AACGAAATCTGTACTCAGGCTAAATTTTCAGATGTTACCAACCACTTCTT
GGTTGTTTTGGCTGATAATGGGAGGCTTAGAAACTTAGACACCATCGCTA
AGAGGTTTGTGGAGTTAACCATGGCACACAAGGGCGAAGTAAAAGTTACT
GTTACATCCGTTATTCCACTTCCCC
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