CB291008

Overview
NameCB291008
Unique NameCB291008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 62/155 (40.00%), Postives = 82/155 (52.90%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMS----QIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            D+ L  +K + P ++T+VEQE N N   F+ R  E+  YY +LFDS+E    +D   RV  E  L R++ N VACEG DRVER E   +WR R  + GF  KP+S         SM   L +G     G+ V+E  G +  GW  R L    AWR
Sbjct:  360 DKFLSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPPSQD---RVMSELFLGRQILNLVACEGEDRVERHETLNQWRNRFGLGGF--KPVSIGSNAYKQASMLLALYAG---ADGYNVEENEGCLLLGWQTRPLIATSAWR 506          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.644e-20
Identity = 60/164 (36.59%), Postives = 89/164 (54.27%), Query Frame = -2
Query:  242 MPDESVSTEN-PRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAW 727
            + DE+ S EN PRD +L+ ++ ++P V        + N   F++R  EA  +Y ALFD  +ST+ RD+  R++ E E   R+  N +ACE  DRVER E + +W+ RM  AGF+ K +   + E  R +L    R +  F V E +  +  GW GRTL     W
Sbjct:  465 LQDETGSEENCPRDAVLKLIRNMNPDVFIHAIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFKQKTIKPELVELFRGKLKKW-RYHKDFVVDENSKWLLQGWKGRTLYASSCW 627          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 60/167 (35.93%), Postives = 86/167 (51.50%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSA--------------RVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPM--SQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            +++L  +K ++P +VTLVEQE N N   F+ R NEA  YY  +FDS+ES+     ++               V  E  L R++ N VACEG DRVER E   +WR RM  +GF+   +  +     SM   L +G     G+ V+E +G +  GW  R L    AW+
Sbjct:  411 EKVLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSGSSSSASPTGILPQPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAG---GDGYRVEENDGCLMLGWHTRPLIATSAWK 574          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = -2
Query:  242 DESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAW 721
            DE+V   +PRD +L+ ++ ++P+V        N N   F+ R  EA  +Y A+FD  +S + R+   R+  E E   R++ N VACEG +RVER E + +W+AR+  AGF   P+ + + ++++ ++ +G   N  F V +    +  GW GR +     W
Sbjct:  606 DETVLVNSPRDAVLKLIRKINPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVNVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKN--FDVDQNGNWLLQGWKGRIVYASSLW 764          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 58/155 (37.42%), Postives = 84/155 (54.19%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKV--EEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPM--SQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            + +L  VK + P +VT+VEQE N N   F+ R  E+  YY  LFDS+E   +   + + K+  E  L +++ N VACEG +RVER E   +WRAR+  AGF+   +  +     SM   L +G     G+ V+E NG +  GW  R L    AW+
Sbjct:  424 ERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLMSEVYLGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAG---GDGYRVEENNGCLMLGWHTRPLIATSAWQ 575          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.021e-19
Identity = 55/152 (36.18%), Postives = 84/152 (55.26%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFE-LKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            ++++  VK + P ++T+VEQE N N   FM R  E+  YY  LFDS+ES+   ++  ++  E  L +++ N VACEG DRVE  E   +WR R+  +GFE +   S    ++       G+    G+ V+E NG +  GW  R L V  AW+
Sbjct:  430 EKVMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLESS--PNNQDKMMSEMYLGKQICNVVACEGSDRVEWHETLTQWRTRLCSSGFEPIHLGSNAFKQASMLLALFGS--GEGYRVEENNGSLTLGWHTRPLIVTSAWK 577          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL3_ARATH (Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 58/152 (38.16%), Postives = 83/152 (54.61%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGL-SRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            D  L  + GLSP V+ + EQ+++ N +  M R+ E+   Y ALFD +E+ V R    R+KVE+ L   ++ N ++CEG +R ER E   KW  R+ +AGF   P+S       R RL  G   + G+ +KEE+G     W  R L  V AWR
Sbjct:  330 DSFLNAIWGLSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIISCEGFERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQAR-RLLQGCGFD-GYRIKEESGCAVICWQDRPLYSVSAWR 479          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 54/152 (35.53%), Postives = 81/152 (53.29%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFE-LKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            +++L  VK + P +VT+VEQE N N   F+ R  E+  YY  LFDS+E +   +   ++  E  L +++ N VACEG DRVER E   +WR R+  AGF+ +   S    ++       G+    G+ V+E  G +  GW  R L    AW+
Sbjct:  423 EKVLSVVKQMKPEIVTVVEQEANHNGPVFVERFTESLHYYSTLFDSLECS--PNSQDKMMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLSSAGFDPIHLGSNAFKQASILLALFGS--GEGYRVEENEGSLMLGWHTRPLIATSAWK 570          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 59/168 (35.12%), Postives = 86/168 (51.19%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE-------STVLRDHSA--------RVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLS--SGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            +++L  V+ + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E       S V    +A        +V  E  L R++ N VACEG +R ER E  G+WR R+  AGFE   +     +   T L+  +G     G+ V+E+ G +  GW  R L    AWR
Sbjct:  450 EKVLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGSSGGPSEVSSGGAAPAAAAGTDQVMSEVYLGRQICNVVACEGTERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAG---GDGYKVEEKEGCLTLGWHTRPLIATSAWR 614          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 59/169 (34.91%), Postives = 86/169 (50.89%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE--------STVLRDHSA--------RVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLS--SGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            +++L  V+ + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E        S V    +A        +V  E  L R++ N VACEG +R ER E  G+WR R+  AGFE   +     +   T L+  +G     G+ V+E+ G +  GW  R L    AWR
Sbjct:  454 EKVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLEGGSSGGGPSEVSSGAAAAPAAAGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAG---GDGYKVEEKEGCLTLGWHTRPLIATSAWR 619          
The following BLAST results are available for this feature:
BLAST of CB291008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RGL1_ARATH1.259e-2040.00DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
SCL34_ARATH1.644e-2036.59Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]
GAI_SOLLC6.247e-2035.93DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
SCL14_ARATH1.392e-1932.30Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
GAI1_VITVI2.374e-1937.42DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
GAIPB_CUCMA9.021e-1936.18DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
SCL3_ARATH3.428e-1838.16Scarecrow-like protein 3 OS=Arabidopsis thaliana G... [more]
GAIP_CUCMA5.847e-1835.53DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
SLN1_HORVU7.637e-1835.12DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
RHT1_WHEAT9.974e-1834.91DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291008 ID=CB291008; Name=CB291008; organism=Citrus sinensis; type=EST; length=731bp
TCGCACTCCCGCACATACATACGTGCAAATAGTTCCAATAACTAAAAATA
AAATAAAAAATTAAATGCAAAAAAAAAAAAAGAAAAAAGTCCCTCAAATA
CAAAACGCTACTCCTTTATTATTATTTCCTTTAGGGGGCCTCTTTTTTTT
CTTTCCCTTTCCATTTTCTCAGGAAAACGTTCGAAAATATAATAACAATT
AATAATATTAAATTAAAAAGAGAGAGAGAGTGAATTCAACGCCAGGCAAA
TACGACGGGGAGAGTTCGACCCATCCAGCCAAAGCAAATGCCGCCGTTTT
CTTCTTTGACGGGGAACCCCGGGTTCACTCGGTTCCCGGAACTCAGTCGA
GTCCGCATTGACTCGGGAATGATTTGACTCATTGGCTTCAACTCGAACCC
AGCCATCCTCATGCGGGCTCGCCACTTGCCAAACACCTCGCATCTCTCCA
CACGGTCCCTGCCTTCACAAGCAACCGAGTTAGCCAATTTACGACTCAGC
CCTTCCTCGACTTTGACTCGGGCCGAGTGGTCTCTCAGCACGGTCGACTC
GATCGAGTCAAACAACGCTCCGTAATATGCACACGCCTCGTTGACGCGCG
CCATGAACGGCGCCGTATTTGTGTTCGTTTCTTGCTCCACCAACGTTACC
ACACTCGGTGACAACCCCTTTACACGCCGGAGCAGCTCGTCCCTCGGATT
CTCCGTTGACACGCTCTCGTCCGGCATTCGA
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