CB291008

Overview
NameCB291008
Unique NameCB291008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 55/148 (37.16%), Postives = 79/148 (53.38%), Query Frame = -2
Query:  260 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEE-GLSRKLANSVACEGRDRVERCEVFGKWRARMRMAG---FELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTL 691
            ++++  +K + P +VT+VEQE N N   F+ R  EA  YY  LFDS+E + +   S  + + E  L R++ N VACEG DRVER E   +WR RM  AG     L   +      +    +SG+    G+ V+E NG +  GW  R L
Sbjct:  383 EKVVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLEGSGVAPASQDLAMSELYLGRQICNVVACEGMDRVERHEPLTQWRTRMETAGVSPVHLGSNAYKQASMLLALFASGD----GYRVEENNGCLMLGWHTRPL 526          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 55/153 (35.95%), Postives = 80/153 (52.29%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPM--SQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            D++L  V  + P + T+VEQE+N N+  F+ R  E+  YY  LFDS+E   +     +V  E  L +++ N VAC+G DRVER E   +WR R   AGF    +  +     SM   L +G     G+ V+E +G +  GW  R L    AW+
Sbjct:  382 DKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEG--VPSGQDKVMSEVYLGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGE---GYRVEESDGCLMLGWHTRPLIATSAWK 529          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 55/165 (33.33%), Postives = 85/165 (51.52%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE------------STVLRDHSARVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLS--SGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            +++L  V+ + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E            S      + +V  E  L R++ N VACEG +R ER E  G+WR+R+  +GF    +     +   T L+  +G     G+ V+E++G +  GW  R L    AWR
Sbjct:  462 EKVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLEGAGAGSGQSTDASPAAAGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRSRLGGSGFAPVHLGSNAYKQASTLLALFAG---GDGYRVEEKDGCLTLGWHTRPLIATSAWR 623          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 58/165 (35.15%), Postives = 84/165 (50.91%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIES-----TVLRDHSA-------RVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLS--SGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            +++L  V  + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E        L   +A       +V  E  L R++ N VACEG +R ER E  G+WR R+  AGFE   +     +   T L+  +G     G+ V+E+ G +  GW  R L    AWR
Sbjct:  460 EKVLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGSSGQAELSPPAAGGGGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAG---GDGYRVEEKEGCLTLGWHTRPLIATSAWR 621          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 51/163 (31.29%), Postives = 83/163 (50.92%), Query Frame = -2
Query:  239 PDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 724
            PDE+VS  +PRD  L+  + ++P +    E     N+  F+ R  EA  +  +LFD  E+T+  D + R  VE E + R   + +ACEG +R  R E + +W+ R+  AGF    +S+ I +  +  +    R +  F +  +N  +  GW GR L  V  W+
Sbjct:  419 PDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVK--ERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWK 579          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 49/153 (32.03%), Postives = 82/153 (53.59%), Query Frame = -2
Query:  266 DESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGR 721
            DE+V+  +PRD +L+ ++ + P V        + N   F+ R  E   +Y +LFD  ++ + R+   RV  E E   R++ N VACEG +RVER E + +W+AR   AGF   P+ + + + ++  + SG +    F V ++   +  GW GR
Sbjct:  532 DETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKELVQKLKLMVESGYKPKE-FDVDQDCHWLLQGWKGR 683          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            +++L  VK + P + T+VEQE+N N   F+ R  E+  YY  LFDS+E   + +   +V  E  L +++ N VACEG DRVER E   +W  R   +G     +     +     LS  N    G+ V+E NG +  GW  R L    AW+
Sbjct:  434 EKVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEG--VPNSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNS-GQGYRVEESNGCLMLGWHTRPLITTSAWK 581          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 54/153 (35.29%), Postives = 79/153 (51.63%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPM--SQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            +++L  VK + P + T+VEQE++ N   F+ R  E+  YY  LFDS+E   +     +V  E  L +++ N VACEG DRVER E   +W  R   +GF    +  +     SM   L +G     G+ V+E NG +  GW  R L    AW+
Sbjct:  427 EKVLGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLEG--VPSSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWANRFGSSGFAPAHLGSNAFKQASMLLALFNGGE---GYRVEENNGCLMLGWHTRPLITTSAWK 574          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 49/153 (32.03%), Postives = 79/153 (51.63%), Query Frame = -2
Query:  242 PRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAW 697
            PRD  L+ ++ ++P+V        + N   F  R  EA  +Y ALFD   +T+ +++  R+  E E   R++ N +ACEG DRVER E + +W+ RM  AGF+ KP+   + +  R ++      +  F + E++     GW GR L     W
Sbjct:  508 PRDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTTRFKEALFHYSALFDLFGATLSKENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMIRAGFKQKPVEAELVQLFREKMKKWG-YHKDFVLDEDSNWFLQGWKGRILFSSSCW 659          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 52/145 (35.86%), Postives = 72/145 (49.66%), Query Frame = -2
Query:  239 VKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 673
            VK + P + T+VEQE+N N   F+ R  E+  YY  LFDS+E         +V  E  L +++ N VACEG DRVER E   +W  R   +GF    +     +   T L+  N    G+ V+E NG +   W  R L    AW+
Sbjct:  427 VKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGA--PSSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWSNRFGSSGFAPAHLGSNAFKQASTLLALFNG-GEGYRVEENNGCLMLSWHTRPLITTSAWK 568          
The following BLAST results are available for this feature:
BLAST of CB291008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GAI_GOSHI1.303e-1737.16DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
GAI_ARATH1.701e-1735.95DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
DWRF8_MAIZE2.222e-1733.33DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]
SLR1_ORYSJ2.902e-1735.15DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
SCL30_ARATH6.465e-1731.29Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
SCL33_ARATH1.440e-1632.03Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
RGA_ARATH1.881e-1635.10DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]
RGA2_BRACM1.881e-1635.29DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
SCL31_ARATH3.208e-1632.03Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]
RGA1_BRACM3.208e-1635.86DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291008 ID=CB291008; Name=CB291008; organism=Citrus sinensis; type=EST; length=731bp
TCGCACTCCCGCACATACATACGTGCAAATAGTTCCAATAACTAAAAATA
AAATAAAAAATTAAATGCAAAAAAAAAAAAAGAAAAAAGTCCCTCAAATA
CAAAACGCTACTCCTTTATTATTATTTCCTTTAGGGGGCCTCTTTTTTTT
CTTTCCCTTTCCATTTTCTCAGGAAAACGTTCGAAAATATAATAACAATT
AATAATATTAAATTAAAAAGAGAGAGAGAGTGAATTCAACGCCAGGCAAA
TACGACGGGGAGAGTTCGACCCATCCAGCCAAAGCAAATGCCGCCGTTTT
CTTCTTTGACGGGGAACCCCGGGTTCACTCGGTTCCCGGAACTCAGTCGA
GTCCGCATTGACTCGGGAATGATTTGACTCATTGGCTTCAACTCGAACCC
AGCCATCCTCATGCGGGCTCGCCACTTGCCAAACACCTCGCATCTCTCCA
CACGGTCCCTGCCTTCACAAGCAACCGAGTTAGCCAATTTACGACTCAGC
CCTTCCTCGACTTTGACTCGGGCCGAGTGGTCTCTCAGCACGGTCGACTC
GATCGAGTCAAACAACGCTCCGTAATATGCACACGCCTCGTTGACGCGCG
CCATGAACGGCGCCGTATTTGTGTTCGTTTCTTGCTCCACCAACGTTACC
ACACTCGGTGACAACCCCTTTACACGCCGGAGCAGCTCGTCCCTCGGATT
CTCCGTTGACACGCTCTCGTCCGGCATTCGA
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