CB291008

Overview
NameCB291008
Unique NameCB291008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 47/165 (28.48%), Postives = 84/165 (50.91%), Query Frame = -2
Query:  239 PDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSAR---VKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 724
            PDE+VS ++PRD +L+  + ++P +    E     N+  FM R  EA  +Y +LFD  ++T+  +   +   +   E L R   + ++CEG +R  R E + +WR R+  AGF+   +S+ I +  +  +    R +  F +  +N  +  GW GR +     W+
Sbjct:  436 PDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLFDMFDTTIHAEDEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVR--KRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWK 598          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 49/163 (30.06%), Postives = 81/163 (49.69%), Query Frame = -2
Query:  239 DESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNR-VNPGFPVKEENGGICFGWMGRTLPVVFAWR 721
            DESV  E+ RD +L  +  ++P +          N   F+ R  EA  ++ ++FD +E+ V R+   R+ +E E   R+  N +ACEG +RVER E + +W  R   +G    P     P  M+T L   +   +  F + ++N  +  GW GRT+  +  W+
Sbjct:  554 DESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFD---PSIMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 713          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSJ (Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 50/146 (34.25%), Postives = 80/146 (54.79%), Query Frame = -2
Query:  239 VKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 673
            ++ L+P VVT+VEQ+ + ++  F+AR  EA  YY ALFDS++++   D   R  VE+  LSR++ N +A  G  R    + FG WR ++  +GF +  ++     + +  L  G   + G+ + EENG +  GW    L    AWR
Sbjct:  512 IQRLAPKVVTMVEQDLS-HSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAG--SAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 653          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSI (Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 50/146 (34.25%), Postives = 80/146 (54.79%), Query Frame = -2
Query:  239 VKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 673
            ++ L+P VVT+VEQ+ + ++  F+AR  EA  YY ALFDS++++   D   R  VE+  LSR++ N +A  G  R    + FG WR ++  +GF +  ++     + +  L  G   + G+ + EENG +  GW    L    AWR
Sbjct:  512 IQRLAPKVVTMVEQDLS-HSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAG--SAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 653          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSI (Protein SCARECROW 1 OS=Oryza sativa subsp. indica GN=SCR1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 50/146 (34.25%), Postives = 80/146 (54.79%), Query Frame = -2
Query:  239 VKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 673
            ++ L+P VVT+VEQ+ + ++  F+AR  EA  YY ALFDS++++   D   R  VE+  LSR++ N +A  G  R    + FG WR ++  +GF +  ++     + +  L  G   + G+ + EENG +  GW    L    AWR
Sbjct:  511 IQRLAPKVVTMVEQDLS-HSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAG--SAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 652          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSJ (Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 50/146 (34.25%), Postives = 80/146 (54.79%), Query Frame = -2
Query:  239 VKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 673
            ++ L+P VVT+VEQ+ + ++  F+AR  EA  YY ALFDS++++   D   R  VE+  LSR++ N +A  G  R    + FG WR ++  +GF +  ++     + +  L  G   + G+ + EENG +  GW    L    AWR
Sbjct:  503 IQRLAPKVVTMVEQDLS-HSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAG--SAAAQAVLLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 644          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = -2
Query:  239 VKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 673
            ++ L+P VVT+VEQ+ + ++  F+AR  EA  YY ALFDS++++   D   R  VE+  LSR++ N +A  G  R    + FG WR ++  +GF    ++     + +  L  G   + G+ + EENG +  GW    L    AWR
Sbjct:  519 IQRLAPKVVTMVEQDLS-HSGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRAASLAG--SAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 660          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 51/163 (31.29%), Postives = 75/163 (46.01%), Query Frame = -2
Query:  242 ELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGL-SRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMS--QIIPESMRTRLSSGNRVNPGFPVKEEN-----------GGICFGWMGRTLPVVFAW 688
            + L  ++  +P  + L EQE   N+     RV  +  YY A+FD+I + +  D   RVKVEE L  R++ N VACEG  R ER   F  WR  +   GF    +S  +++   M  R+   +  N GF   E +           GG+   W  + L  + AW
Sbjct:  493 DFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGSD--NEGFFNVERSDEDNGGEGGRGGGVTLRWSEQPLYTISAW 653          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 54/154 (35.06%), Postives = 74/154 (48.05%), Query Frame = -2
Query:  239 DELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEGL-SRKLANSVACE--GRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 691
            D  LR  K L+P VVTL E E + N   F  RV  A  +Y A+F+S+E  + RD   RV+VE  L  R+++  +  E  G  R ER E   +WR  M  AGFE   +S       +  L + N  N    V+ + G I   W    L  + +WR
Sbjct:  432 DTALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGRRISGLIGPEKTGIHR-ERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESKPGFISLAWNDLPLLTLSSWR 584          
BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = -2
Query:  239 LSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 664
            L+P VVT+VEQ+ + N   F+ R  EA  YY ALFDS+ S+   +   R  VE+  LSR++ N +A  G  R    + F  WR +++  GF  + +S     + +  L  G   + G+ + E+NG +  GW    L    AWR
Sbjct:  668 LAPKVVTVVEQDLS-NAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEIK-FHNWREKLQQCGF--RGVSLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 806          
The following BLAST results are available for this feature:
BLAST of CB291008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SCL11_ARATH1.219e-1528.48Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
SCL9_ARATH7.903e-1530.06Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SCR2_ORYSJ3.922e-1434.25Protein SCARECROW 2 OS=Oryza sativa subsp. japonic... [more]
SCR2_ORYSI3.922e-1434.25Protein SCARECROW 2 OS=Oryza sativa subsp. indica ... [more]
SCR1_ORYSI3.922e-1434.25Protein SCARECROW 1 OS=Oryza sativa subsp. indica ... [more]
SCR1_ORYSJ6.690e-1434.25Protein SCARECROW 1 OS=Oryza sativa subsp. japonic... [more]
SCR_MAIZE1.141e-1334.25Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1[more]
SCL28_ARATH5.663e-1331.29Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
SCL4_ARATH9.660e-1335.06Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
SCR_PEA2.379e-1134.27Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291008 ID=CB291008; Name=CB291008; organism=Citrus sinensis; type=EST; length=731bp
TCGCACTCCCGCACATACATACGTGCAAATAGTTCCAATAACTAAAAATA
AAATAAAAAATTAAATGCAAAAAAAAAAAAAGAAAAAAGTCCCTCAAATA
CAAAACGCTACTCCTTTATTATTATTTCCTTTAGGGGGCCTCTTTTTTTT
CTTTCCCTTTCCATTTTCTCAGGAAAACGTTCGAAAATATAATAACAATT
AATAATATTAAATTAAAAAGAGAGAGAGAGTGAATTCAACGCCAGGCAAA
TACGACGGGGAGAGTTCGACCCATCCAGCCAAAGCAAATGCCGCCGTTTT
CTTCTTTGACGGGGAACCCCGGGTTCACTCGGTTCCCGGAACTCAGTCGA
GTCCGCATTGACTCGGGAATGATTTGACTCATTGGCTTCAACTCGAACCC
AGCCATCCTCATGCGGGCTCGCCACTTGCCAAACACCTCGCATCTCTCCA
CACGGTCCCTGCCTTCACAAGCAACCGAGTTAGCCAATTTACGACTCAGC
CCTTCCTCGACTTTGACTCGGGCCGAGTGGTCTCTCAGCACGGTCGACTC
GATCGAGTCAAACAACGCTCCGTAATATGCACACGCCTCGTTGACGCGCG
CCATGAACGGCGCCGTATTTGTGTTCGTTTCTTGCTCCACCAACGTTACC
ACACTCGGTGACAACCCCTTTACACGCCGGAGCAGCTCGTCCCTCGGATT
CTCCGTTGACACGCTCTCGTCCGGCATTCGA
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