CB291008

Overview
NameCB291008
Unique NameCB291008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB291008 vs. ExPASy Swiss-Prot
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 47/143 (32.87%), Postives = 73/143 (51.05%), Query Frame = -2 
Query:  239 LSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSARVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIPESMRTRLSSGNRVNPGFPVKEENGGICFGWMGRTLPVVFAWR 664
            L+P VVT+VEQ+ + +   F+ R  EA  YY ALFDS+ +    +   R  VE+  LSR++ N +A  G  R    + F  WR + + +GF  + +S     + +  L  G   + G+ + E+NG +  GW    L    AWR
Sbjct:  639 LAPKVVTVVEQDLS-HAGSFLGRFVEAIHYYSALFDSLGACYGEESEERHAVEQQLLSREIRNVLAVGGPSRSGEVK-FNNWREKFQQSGF--RGVSLAGNAAAQATLLLGMFHSDGYTLAEDNGALKLGWKDLCLLTASAWR 777
The following BLAST results are available for this feature:
BLAST of CB291008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SCR_IPONI6.923e-1132.87Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ah07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ah07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291008 ID=CB291008; Name=CB291008; organism=Citrus sinensis; type=EST; length=731bp
TCGCACTCCCGCACATACATACGTGCAAATAGTTCCAATAACTAAAAATA
AAATAAAAAATTAAATGCAAAAAAAAAAAAAGAAAAAAGTCCCTCAAATA
CAAAACGCTACTCCTTTATTATTATTTCCTTTAGGGGGCCTCTTTTTTTT
CTTTCCCTTTCCATTTTCTCAGGAAAACGTTCGAAAATATAATAACAATT
AATAATATTAAATTAAAAAGAGAGAGAGAGTGAATTCAACGCCAGGCAAA
TACGACGGGGAGAGTTCGACCCATCCAGCCAAAGCAAATGCCGCCGTTTT
CTTCTTTGACGGGGAACCCCGGGTTCACTCGGTTCCCGGAACTCAGTCGA
GTCCGCATTGACTCGGGAATGATTTGACTCATTGGCTTCAACTCGAACCC
AGCCATCCTCATGCGGGCTCGCCACTTGCCAAACACCTCGCATCTCTCCA
CACGGTCCCTGCCTTCACAAGCAACCGAGTTAGCCAATTTACGACTCAGC
CCTTCCTCGACTTTGACTCGGGCCGAGTGGTCTCTCAGCACGGTCGACTC
GATCGAGTCAAACAACGCTCCGTAATATGCACACGCCTCGTTGACGCGCG
CCATGAACGGCGCCGTATTTGTGTTCGTTTCTTGCTCCACCAACGTTACC
ACACTCGGTGACAACCCCTTTACACGCCGGAGCAGCTCGTCCCTCGGATT
CTCCGTTGACACGCTCTCGTCCGGCATTCGA
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