CB291024

Overview
NameCB291024
Unique NameCB291024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_CAEBR (Probable V-type proton ATPase subunit B OS=Caenorhabditis briggsae GN=vha-12 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.419e-40
Identity = 84/131 (64.12%), Postives = 95/131 (72.52%), Query Frame = -3
Query:  363 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSR 755
            QIY+DRQL NR IYPPINVLPSL RLMKSAIG+ MTR DHSDVSNQLYA YAIGKDVQAMKAVVG                  E+ F++QG Y+ R IF+ LD+ W L RIFPRE+  RIP K+LD+YY R
Sbjct:  356 QIYVDRQLHNRLIYPPINVLPSLSRLMKSAIGDKMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSDDLLYLEFLVKFEKNFISQGHYENRTIFESLDIGWELLRIFPREMLKRIPAKSLDKYYPR 486          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB2_ACEAT (V-type proton ATPase subunit B 2 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.419e-40
Identity = 85/131 (64.89%), Postives = 95/131 (72.52%), Query Frame = -3
Query:  363 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSR 755
            QIY+DRQL N QIYPPINVLP+L RLMKSAIGEGMTR+DHS+VSNQLY NYAIGKDV AMKAVVG                  ERKFV QG Y+ R IF  LDLAWTL R+FP+E+  RI  KTL++ Y R
Sbjct:  359 QIYVDRQLHNIQIYPPINVLPTLSRLMKSAIGEGMTRKDHSEVSNQLYDNYAIGKDVAAMKAVVGEEALSSEDLLYLEFLDKFERKFVNQGHYEARTIFDSLDLAWTLLRLFPKELLRRITAKTLEKMYER 489          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_SCHPO (V-type proton ATPase subunit B OS=Schizosaccharomyces pombe GN=vma2 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.772e-40
Identity = 83/133 (62.41%), Postives = 96/133 (72.18%), Query Frame = -3
Query:  357 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDA 755
            QI++DRQL N  IYPPINVLPSL RLMKSAIGEGMTR DH DVSNQLYA YAIG+D  +MK+VVG                  E+ F++QGAY+ R IF+ LDLAW+L RIFPRE+  RIP K LDQYYSR +
Sbjct:  354 QIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFISQGAYENRTIFETLDLAWSLLRIFPREMLTRIPKKILDQYYSRSS 486          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_CANTR (V-type proton ATPase subunit B OS=Candida tropicalis GN=VMA2 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.845e-40
Identity = 82/132 (62.12%), Postives = 97/132 (73.48%), Query Frame = -3
Query:  360 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRD 755
            QI+IDRQL NR IYPPINVLPSL RLMKSAIGEGMTR+DH DVSNQLYA YAIGKD  AMKAVVG                  E+ F++QGAY+ R IF+ LDLAW+L RI+P+E+ +RI  K L+++Y RD
Sbjct:  357 QIFIDRQLHNRGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAAAMKAVVGEEALSTEDKLSLEFLEKFEKNFISQGAYENRTIFESLDLAWSLLRIYPKEMLNRISPKILEEFYGRD 488          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_CYACA (V-type proton ATPase subunit B OS=Cyanidium caldarium PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.741e-39
Identity = 83/131 (63.36%), Postives = 95/131 (72.52%), Query Frame = -3
Query:  363 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSR 755
            QIY+DRQL NRQIYPPINVLPSL RLMKSAIGEGMTR+DHSDVSNQLYA YA+GKD  AM+AVVG                  ER+FV QGAY+ R+I+  LD+AW L RIFP ++  RIP K L +YY R
Sbjct:  354 QIYLDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYAAYAMGKDALAMRAVVGVEALSQEDLLYLEFHDKFERRFVNQGAYERRDIYTSLDMAWDLLRIFPVQMLRRIPEKILQEYYHR 484          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_NEUCR (V-type proton ATPase subunit B OS=Neurospora crassa GN=vma-2 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.335e-39
Identity = 80/135 (59.26%), Postives = 97/135 (71.85%), Query Frame = -3
Query:  351 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDAVN 755
            QI++DR L NR IYPPINVLPSL RLMKSAIGEGMTR+DH DVSNQLYA YAIG+D  AMKAVVG                  ER F+AQG Y+ R IF+ LDLAW+L RI+ +++ +RIP K +D++YSR A +
Sbjct:  351 QIFVDRGLHNRGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGRDAAAMKAVVGEEALSNEDKLSLEFLDKFERSFIAQGPYESRTIFESLDLAWSLLRIYRKDMLNRIPKKIIDEFYSRSAAD 485          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_YEAST (V-type proton ATPase subunit B OS=Saccharomyces cerevisiae GN=VMA2 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.402e-38
Identity = 78/131 (59.54%), Postives = 94/131 (71.76%), Query Frame = -3
Query:  363 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSR 755
            QI++DRQL N+ IYPPINVLPSL RLMKSAIGEGMTR+DH DVSNQLYA YAIGKD  AMKAVVG                  E+ F+ QGAY+ R +F+ LD AW+L RI+P+E+ +RI  K LD++Y R
Sbjct:  357 QIFVDRQLHNKGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAAAMKAVVGEEALSIEDKLSLEFLEKFEKTFITQGAYEDRTVFESLDQAWSLLRIYPKEMLNRISPKILDEFYDR 487          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_ENCCU (V-type proton ATPase subunit B OS=Encephalitozoon cuniculi GN=VMA2 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.056e-38
Identity = 78/130 (60.00%), Postives = 94/130 (72.31%), Query Frame = -3
Query:  366 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYS 755
            QIY+DRQ+ NRQIYPPINVLPSL RLMKSAIGEGMTR+DH DVSNQLYA YAIGKD QAMKAVVG                  ER+F++Q   + R + Q LD+AW L ++FPRE+ +RIP   LD+++S
Sbjct:  341 QIYVDRQMHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGKDAQAMKAVVGEDSLSAEDRISIEFLERFEREFISQRHDELRTVDQSLDIAWDLLKVFPREMLNRIPSDILDEFHS 470          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_DICDI (V-type proton ATPase subunit B OS=Dictyostelium discoideum GN=vatB PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.053e-37
Identity = 81/133 (60.90%), Postives = 92/133 (69.17%), Query Frame = -3
Query:  357 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYYSRDA 755
            QI+IDRQ+ NRQIYPPINVLPSL RLMKSAIG+ MTR DHS+VSNQ+YANYAIGKDVQAMKAVVG                  E  FV Q  Y+ R+IF  LDL W+L R FP  +  RI  KT+ QYYSR +
Sbjct:  353 QIFIDRQINNRQIYPPINVLPSLSRLMKSAIGDDMTRGDHSEVSNQMYANYAIGKDVQAMKAVVGEEALSSEDKLYLEFLERFESSFVGQNHYENRDIFNSLDLGWSLLRTFPSNLLKRITEKTIKQYYSRSS 485          
BLAST of CB291024 vs. ExPASy Swiss-Prot
Match: VATB_TRYCO (V-type proton ATPase subunit B OS=Trypanosoma congolense PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.597e-32
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = -3
Query:  369 QIYIDRQLQNRQIYPPINVLPSLFRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFLDLAWTLFRIFPREVFHRIPGKTLDQYY 755
            QIY+DRQL NRQ+YPPIN+LPSL RLMK+AIGEGMTRRDHS VSNQ+YA   +  D+ AMKAVVG                  E+KF+ QG ++ R++FQ LDL W L RIFP+ + ++I  KT +++Y
Sbjct:  351 QIYVDRQLHNRQLYPPINILPSLSRLMKNAIGEGMTRRDHSGVSNQMYARMRL-DDILAMKAVVGEETLSSEDLLHLEFLEKFEKKFICQGFHESRDVFQSLDLCWQLLRIFPKVLLNKIDVKTRNEFY 478          
The following BLAST results are available for this feature:
BLAST of CB291024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
VATB_CAEBR4.419e-4064.12Probable V-type proton ATPase subunit B OS=Caenorh... [more]
VATB2_ACEAT4.419e-4064.89V-type proton ATPase subunit B 2 OS=Acetabularia a... [more]
VATB_SCHPO5.772e-4062.41V-type proton ATPase subunit B OS=Schizosaccharomy... [more]
VATB_CANTR9.845e-4062.12V-type proton ATPase subunit B OS=Candida tropical... [more]
VATB_CYACA3.741e-3963.36V-type proton ATPase subunit B OS=Cyanidium caldar... [more]
VATB_NEUCR8.335e-3959.26V-type proton ATPase subunit B OS=Neurospora crass... [more]
VATB_YEAST5.402e-3859.54V-type proton ATPase subunit B OS=Saccharomyces ce... [more]
VATB_ENCCU7.056e-3860.00V-type proton ATPase subunit B OS=Encephalitozoon ... [more]
VATB_DICDI2.053e-3760.90V-type proton ATPase subunit B OS=Dictyostelium di... [more]
VATB_TRYCO2.597e-3254.26V-type proton ATPase subunit B OS=Trypanosoma cong... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291024 ID=CB291024; Name=CB291024; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTAGACAGAACTTCTGGATAAATAGAATAATCCTC
AAACTTGGGCATTATAATCCTCACTACCATGGTTTCAATATTGATAAAAA
GTATCCAGATCCCCCTAATAAATAGAGATACAGGAATTACAAGATCTAAA
AAGCCCTCCGCTGAAAGAATATTTGCATCTTTTGACTAAACAAAAAGCTT
TGCACGGGGGCCTCAAGGGGACTACAACCTTTATTATTTCTGCTCAACGG
AAAAATGCAACCTATATCAAAAAGCTGGGGAATAAACAAATTGTCGACAA
AACCAACGAGGCAGCAAGGTACATGTCAGTACAAAAGACCTTCTTCATCA
ATTAACTGCATCACGGCTGTAGTACTGGTCAAGGGTCTTTCCTGGTATAC
GATGGAAAACCTCCCGAGGAAAGATGCGAAAAAGTGTCCATGCCAAATCA
AGAAATTGGAAAATATTCCTAAAGTCATAAGCTCCTTGAGCAACAAATTT
TCTCTCAAACTTATCCAGGAACTCTAAGTACAGCAAATCCTCAAAAAAAA
GTGCTTCTTCTCCGACCACAGCCTTCATTGCCTGGACATCCTTCCCAATG
GCATAATTTGCATACAGCTGGTTGGAAACATCGGAATGGTCCCTACGAGT
CATCCCCTCACCAATAGCACTCTTCATCAAACGAAATAGGGATGGAAGGA
CATTGATCGGAGGATATATCTGTCTGTTCTGGAGCTGCCGGTCAATGTAA
ATCTGCC
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