CB291025

Overview
NameCB291025
Unique NameCB291025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB_SULIA (V-type ATP synthase beta chain OS=Sulfolobus islandicus (strain M.16.27) GN=atpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.067e-17
Identity = 52/129 (40.31%), Postives = 70/129 (54.26%), Query Frame = -3
Query:  370 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYY 756
            QI + R L N+ IYPPINVL SLSRL K  IGEG TR DH DVSNQL+A+YA   D + + A++G                  ERKFV+QG  + R+I    D+   +  + P      I  + + +Y+
Sbjct:  328 QIVLDRALYNKGIYPPINVLMSLSRLAKDGIGEGKTRDDHKDVSNQLFASYARAVDTRGLAAIIGEDSLSEVDRKYLLFGELFERKFVSQGFNENRDIETTLDIGWEILSVLPESELTNIKTQYIKKYH 456          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB_METBU (V-type ATP synthase beta chain OS=Methanococcoides burtonii (strain DSM 6242) GN=atpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.067e-17
Identity = 53/129 (41.09%), Postives = 70/129 (54.26%), Query Frame = -3
Query:  370 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYY 756
            QI ++R+L  + IYPPINVLPSLSRLM S IGEG TR DH  VS+Q+YA YA G+D++ + A+VG                  E +FV Q   + R I     +A  +    P      I  K LD+Y+
Sbjct:  325 QIVVSRELHRKGIYPPINVLPSLSRLMNSGIGEGKTRDDHKAVSDQMYAAYAEGRDLRGLVAIVGKEALSERDRKMLEFADLFEDRFVRQSRDEDRTIDDTLRIAWEILAELPEAQLTRIDNKYLDKYH 453          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB_COPPD (V-type ATP synthase beta chain OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=atpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.067e-17
Identity = 52/128 (40.62%), Postives = 74/128 (57.81%), Query Frame = -3
Query:  373 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQY 756
            QI+++R LQ++ IYPPI+VL SLSRLM+  IGEG TR DHS VSNQLYA YA GK+ + ++ V+G                  E +F+AQG  + R I +   +   L  + PR     I  + +++Y
Sbjct:  325 QIFLSRDLQHKNIYPPIDVLQSLSRLMQRGIGEGHTREDHSAVSNQLYAAYARGKEARELEIVLGEAALTDLDRLYVKFADRLESEFIAQGEDENRTIEETLAIGWRLLRMLPRSELKRIRDEYINKY 452          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB_SULAC (V-type ATP synthase beta chain OS=Sulfolobus acidocaldarius GN=atpB PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.393e-17
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = -3
Query:  370 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYY 756
            QI + R L N+ IYPPINVL SLSRLM+  IGEG TR DH D+SNQL+A YA  +D++ + A++G                  ERKF+ QG  + R+I    D+   +  + P      I  + + +Y+
Sbjct:  331 QIVLDRSLFNKGIYPPINVLASLSRLMRDGIGEGKTRDDHKDLSNQLFAAYARAQDIRGLAAIIGEDSLSDVDRKYLLFAEQFERKFINQGINENRDIETTLDIGWEVISMLPESEISLIRTEYIKKYH 459          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB_HALWD (V-type ATP synthase beta chain OS=Haloquadratum walsbyi (strain DSM 16790) GN=atpB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.393e-17
Identity = 47/132 (35.61%), Postives = 76/132 (57.58%), Query Frame = -3
Query:  361 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSRD 756
            QIY+ R L ++ + PP+NVLPSLSRLM   IGEG+TR DH+DVS+Q+YA YA G+D++ +  +VG                  E +F+ QG    R+I +  ++   L  + P++  + +    +++YY  +
Sbjct:  333 QIYVDRDLNSQGVQPPVNVLPSLSRLMDDGIGEGLTREDHADVSDQMYAAYAEGEDLRDLVNIVGREALSDRDNKYLDFADRFETEFIDQGFEVNRSINETLEIGWDLLSMLPKDELNRVDEDLIEKYYREE 464          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB_THEPD (V-type ATP synthase beta chain OS=Thermofilum pendens (strain Hrk 5) GN=atpB PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.820e-17
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = -3
Query:  364 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQYYSR 756
            QI++++++  + IYPPIN+LPSLSRLMKS IG G TR DH  +++QLY  Y+ G   + +  ++G                  E KFV QG Y+ R+I +  DL   +  I P E    IP K +++Y+ +
Sbjct:  327 QIFLSQEMYAQGIYPPINILPSLSRLMKSGIGPGKTREDHRYLADQLYDAYSRGVKARDLARIIGEIGLSERNRRFLKFAEEFENKFVNQGFYENRSIEETLDLGWQVLSILPEEELVRIPQKIIEKYHPK 457          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB_THESI (V-type ATP synthase beta chain OS=Thermococcus sp. (strain KI) GN=atpB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.104e-17
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = -3
Query:  418 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFP 756
            QI ++R+L  + IYPPI+VLPSLSRLMK  IG+G TR DH  +S QLYA YA G+ ++ + AVVG                  ER+FVAQ   + R+IF+  DL   L    P
Sbjct:  327 QIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGKGRTREDHPQLSQQLYAAYAEGRSLRDLVAVVGEEALSETDRKYLKFADRFEREFVAQRYDEDRSIFETLDLGWELLAELP 439          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB_THEGJ (V-type ATP synthase beta chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=atpB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.104e-17
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = -3
Query:  418 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFP 756
            QI ++R+L  + IYPPI+VLPSLSRLMK  IG+G TR DH  +S QLYA YA G+ ++ + AVVG                  ER+FVAQ   + R+IF+  DL   L    P
Sbjct:  327 QIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGKGRTREDHPQLSQQLYAAYAEGRSLRDLVAVVGEEALSETDRKYLKFADRFEREFVAQRYDEDRSIFETLDLGWELLAELP 439          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB_PYRKO (V-type ATP synthase beta chain OS=Pyrococcus kodakaraensis GN=atpB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.104e-17
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = -3
Query:  418 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFP 756
            QI ++R+L  + IYPPI+VLPSLSRLMK  IG+G TR DH  +S QLYA YA G+ ++ + AVVG                  ER+FVAQ   + R+IF+  DL   L    P
Sbjct:  329 QIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGKGRTREDHPQLSQQLYAAYAEGRSLRDLVAVVGEEALSETDRKYLKFADRFEREFVAQRYDEDRSIFETLDLGWELLAELP 441          
BLAST of CB291025 vs. ExPASy Swiss-Prot
Match: VATB_METTH (V-type ATP synthase beta chain OS=Methanobacterium thermoautotrophicum GN=atpB PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.104e-17
Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = -3
Query:  373 QIYIARQLQNRQIYPPINVLPSLSRLMKSVIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGXXXXXXXXXXXXXXXXXXERKFVAQGAYDFRNIFQFFDLARTLFCIFPREVFHCIPGKPLDQY 756
            QI ++R L  + IYPP++VLPSLSRLM   IGEG TR DHS VS+QLY+ YA G+D++ + AVVG                  E++F+ Q   + R+I +  +L   L  + PR     +  + + +Y
Sbjct:  331 QIVLSRDLHRKGIYPPVDVLPSLSRLMSGGIGEGRTREDHSGVSDQLYSAYAEGRDLRDLMAVVGEEALTERDRKFLKFADEFEKRFITQARDEDRSIEETLNLGWELLSLLPRSELKRVREEHIPKY 458          
The following BLAST results are available for this feature:
BLAST of CB291025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
VATB_SULIA1.067e-1740.31V-type ATP synthase beta chain OS=Sulfolobus islan... [more]
VATB_METBU1.067e-1741.09V-type ATP synthase beta chain OS=Methanococcoides... [more]
VATB_COPPD1.067e-1740.63V-type ATP synthase beta chain OS=Coprothermobacte... [more]
VATB_SULAC1.393e-1738.76V-type ATP synthase beta chain OS=Sulfolobus acido... [more]
VATB_HALWD1.393e-1735.61V-type ATP synthase beta chain OS=Haloquadratum wa... [more]
VATB_THEPD1.820e-1737.40V-type ATP synthase beta chain OS=Thermofilum pend... [more]
VATB_THESI3.104e-1745.13V-type ATP synthase beta chain OS=Thermococcus sp.... [more]
VATB_THEGJ3.104e-1745.13V-type ATP synthase beta chain OS=Thermococcus gam... [more]
VATB_PYRKO3.104e-1745.13V-type ATP synthase beta chain OS=Pyrococcus kodak... [more]
VATB_METTH3.104e-1738.28V-type ATP synthase beta chain OS=Methanobacterium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291025 ID=CB291025; Name=CB291025; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTTTTTTTTTAAGACCCACTTACGGGATAAATAGAATAATCTT
CAAACTTGGGCATTCTAATCCTCACTACCATGGTTTCAATATTGATAAAA
AGTATCCAAATCCCACTAATAAATAAAGATACAGGAATTACAAAATCTAA
AAAGCCCTCCCCTGAAAAAATATTTGCATCTTTTGACTAAACAAAAAGCT
TTGCACGGGGGCCTCAAGGGGACTACAACCTTTATTATTTCTGCTCAACG
GAAAAATGCAACCTATATCAAAAAGCTGGGGAATAAACAAATTGTCGACA
AAACCAACGAGGCAGCAAGGTACATGTCAGTACAAAAAACCTTCTTCATC
AATTAACTGCATCACGGCTGTAATACTGGTCAAGGGGCTTTCCTGGTATA
CAATGGAAAACCTCCCGAGGAAAGATGCAAAAAAGTGTCCTTGCCAAATC
AAAAAATTGGAAAATATTCCTAAAGTCATAAGCTCCTTGAGCAACAAATT
TTCTCTCAAACTTATCCAGGAACTCTAAGTACAGCAAATCCTCAAAAAAA
AGTGCTTCTTCTCCGACCACAGCCTTCATTGCCTGGACATCCTTCCCAAT
GGCATAATTTGCATACAGCTGGTTGGAAACATCGGAATGGTCCCTACGAG
TCATCCCCTCACCAATAACACTCTTCATCAAACGAGATAGGGATGGAAGG
ACATTGATCGGAGGATATATCTGTCTGTTCTGGAGCTGCCGGGCAATGTA
AATCTGCC
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