CB291036

Overview
NameCB291036
Unique NameCB291036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.682e-52
Identity = 94/176 (53.41%), Postives = 127/176 (72.16%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            + S +V KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQ+DGFD    +K++MATNRPDTLDPALLRPGRLDRK+   LP+ ++R  I KIH   +    +I +E + +L     GAD+R+VCTEAGMFAIRA    V ++DF+ AV KV
Sbjct:  199 VSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.682e-52
Identity = 94/176 (53.41%), Postives = 127/176 (72.16%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            + S +V KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQ+DGFD    +K++MATNRPDTLDPALLRPGRLDRK+   LP+ ++R  I KIH   +    +I +E + +L     GAD+R+VCTEAGMFAIRA    V ++DF+ AV KV
Sbjct:  199 VSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.682e-52
Identity = 94/176 (53.41%), Postives = 127/176 (72.16%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            + S +V KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQ+DGFD    +K++MATNRPDTLDPALLRPGRLDRK+   LP+ ++R  I KIH   +    +I +E + +L     GAD+R+VCTEAGMFAIRA    V ++DF+ AV KV
Sbjct:  199 VSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.502e-52
Identity = 104/178 (58.43%), Postives = 134/178 (75.28%), Query Frame = -2
Query:  307 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG-DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 837
            GSELVQKY+GEG++MVRELF MAR     I+F DE+D+IG  R + G GG D+EVQRTMLE++NQLDGF++  NIK++MATNR D LDPALLRPGR+DRK+EF  P+  +R  I KIH+R MN  R I    +A +   ++GA+I++ CTEAGMFA+R RR  VT++D   AV KV+K
Sbjct:  223 GSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGMFALRERRVHVTQEDLEMAVAKVMK 400          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.574e-52
Identity = 97/188 (51.60%), Postives = 138/188 (73.40%), Query Frame = -2
Query:  277 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPK 840
            +GSEL+QKY+G+G +MVRELF++A      IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KVLMATNR ++LDPAL+RPGR+DRK+EF LPD +++ +IF+IHT  M   +++  E         +GADI+++CTEAG+ A+R RR  VT +DF  +   V+  Y+K    P+
Sbjct:  254 VGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKSKENVL--YRKKEGAPE 439          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 93/176 (52.84%), Postives = 134/176 (76.14%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            +GSELV+K++GEGA++VR++F++A+ K  CI+F DE+DA+   R +   GGD EVQRT+++++ ++DGFD+RG++K++ ATNRPD LDPA+LRPGR DR +E   PD + R +IFKIHT  MN  + +    +A++  N  GADI++VCTEAGMFAIR  R+ VT KDF +A+ KV
Sbjct:  214 VGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNI-KSVDLREIAKMAENMVGADIKAVCTEAGMFAIREGREYVTTKDFKEALLKV 388          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = -2
Query:  307 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG-DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 837
            GSELVQKY+GEG+RMVRELF MAR     I+F DE+D+IG +R + G GG D+EVQRTMLE++NQLDGF++  NIKVLM TNR D LDPALLRPGR+DRK+EF  P    R  I KIH+R MN  R I  + ++     ++GA++++VCTEAGM+A+R RR  V+++DF  AV+KV+K
Sbjct:  212 GSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDFEMAVSKVMK 389          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.331e-51
Identity = 98/174 (56.32%), Postives = 128/174 (73.56%), Query Frame = -2
Query:  310 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 831
            ELVQK++GEGAR+VRELF++AR K   I+F DE+DAIG  R  D   GD EVQRT+ +++ ++DGFD   +IKV+ ATNR D LDPALLRPGR DR ++  LPD E R +IFKIHTR MN   D+  + LA++   ++GADI+++CTEAGM AIR  R  VT  DFL AV++V+
Sbjct:  248 ELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDFLKAVDRVM 421          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.738e-51
Identity = 93/176 (52.84%), Postives = 126/176 (71.59%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            + S +V KY+GE AR++RE+F  AR  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQ+DGFD    +K++MATNRPDTLDPALLRPGRLDRK+   LP+ ++R  I KIH   +    +I +E + +L     GAD+ +VCTEAGMFAIRA    V ++DF+ AV KV
Sbjct:  199 VSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.872e-51
Identity = 90/184 (48.91%), Postives = 137/184 (74.46%), Query Frame = -2
Query:  289 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFS 840
            +GSELV+K++GEGA++VR++F++A+ K  CI+F DE+DA+   R +   GGD EVQRT+++++ ++DGFD+RG++K++ ATNRPD LDPA+LRPGR DR +E  +PD + R +I KIHT  MN  +++    +A+L  N  GAD+++VCTEAGMFAIR  R+ +   DF +A++K+    +K S
Sbjct:  214 VGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KNVDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKEKCS 396          
The following BLAST results are available for this feature:
BLAST of CB291036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
PRS10_SPETR2.682e-5253.4126S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE2.682e-5253.4126S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN2.682e-5253.4126S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS8_NAEFO3.502e-5258.4326S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS4_CAEEL4.574e-5251.60Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PSMR_METVS7.803e-5252.84Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS8_DICDI7.803e-5258.4326S protease regulatory subunit 8 OS=Dictyostelium... [more]
PSMR_METKA1.331e-5156.32Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PRS10_BOVIN1.738e-5152.8426S protease regulatory subunit S10B OS=Bos taurus... [more]
PSMR_METM73.872e-5148.91Proteasome-activating nucleotidase OS=Methanococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ba10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291036 ID=CB291036; Name=CB291036; organism=Citrus sinensis; type=EST; length=841bp
TTTTTTTTTTTTTAGAAAGAAATATTCATAAAATAATTTAATTCCATGTT
CTAACAGAAATTGGAAAATCCACGTAATTATGAAATCATACAAAATGGTT
CTTGAGAGGGCAAATGTTACGCAAACACAGCAAGTTTAAACAACAGAGAA
TCAAATTGATGGGACAGCCTCTCAAAGGAACTTCATGATCTTGGATAACC
CTCTGAGAAGGTGGAACAATTGCGTCCAAGCATCTCTCCAGAAAGAAAAA
CATCGGAATCAATTGTAGACCATATATTTAGGCGTTGCACTGAACTTTTG
ATATCCCTTGATGACTTTGTTCACTGCATCGAGGAAGTCTTTCTCTGTCA
CTGTTTTTCTTCGTGCCCGGATGGCAAACATCCCAGCTTCTGTGCATACA
CTCCTTATATCAGCTCCGGTGGAATTGGGGCAAAGCCTAGCCAAGAGCTC
AAAGCGGATATCTCTTTCACAGTTCATTGTTCGCGTGTGGATCTTAAATA
TCTGTGTCCGGCTCTCCAAATCAGGAAGGCCAAACTCAACCTTACGATCT
AATCGTCCGGGACGCAACAGGGCCGGATCAAGTGTGTCAGGCCTGTTTGT
TGCCATTAGAACTTTGATATTTCCACGAGCATCAAACCCATCAAGCTGAT
TCACAATTTCAAGCATTGTGCGTTGAACCTCGTTGTCCCCGCCAACACCA
TCATCAAAACGTGCACCTCCTATAGCATCAACTTCATCAAAGAAGACAAT
ACAAGCCTTCTTTGAACGTGCCATCTGAAATAGTTCGCGAACCATACGAG
CTCCCTCACCAACATATTTCTGTACAAGCTCACTCCCAATC
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