CB291036

Overview
NameCB291036
Unique NameCB291036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 94/175 (53.71%), Postives = 125/175 (71.43%), Query Frame = -2
Query:  313 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 837
            G +LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+EF  P  E+R +I +IH+R MN   D+ FE LAR   +  GA +++VC EAGM A+R     VT +DF + + +V
Sbjct:  237 GPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQV 411          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.734e-49
Identity = 94/175 (53.71%), Postives = 125/175 (71.43%), Query Frame = -2
Query:  313 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 837
            G +LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+EF  P  E+R +I +IH+R MN   D+ FE LAR   +  GA +++VC EAGM A+R     VT +DF + + +V
Sbjct:  243 GPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQV 417          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 6.182e-49
Identity = 89/176 (50.57%), Postives = 124/176 (70.45%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            + S +V KY+GE AR++RE+F  A+  + C++F DE+DAIGG RF +G   D E+QRT++E++NQ+DGFD  G  K++MATNRPDTLDPALLRPGRLDRK+E  LP+   R +I KIH   ++ + +I +E L +L   + GAD+R+V TEAG  AI+  R  V + D + A  KV
Sbjct:  198 VSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKV 373          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 194.126 bits (492), Expect = 8.075e-49
Identity = 96/187 (51.34%), Postives = 125/187 (66.84%), Query Frame = -2
Query:  274 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKY 834
            S +V KY+GE AR++RE+F  A+  + CI+F DEVDAIGG RF +G   D E+QRT++E++ Q+DGFD  G  K++MATNRPDTLDPALLRPGRLDRKVE  LP+   R +IFKIHT  +    +  FE   ++     GADIR+  TEAG FAIR  R  +   D + AV KV +  +K   T +Y
Sbjct:  249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAE-VKKLEGTIEY 434          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.055e-48
Identity = 92/176 (52.27%), Postives = 125/176 (71.02%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            + SE  QK+VGEGAR+VRELF+MA+ K   I+F DE+DAIG  R D G  G+ E+QRT+++++ +LDGFD   N+K++ ATNR D LDPALLRPGR DR +E  LPD + RT+IF I+ + M  E +I  ELL++L    +GADI++VC EA   AIR  R  VT  D ++A+NK+
Sbjct:  200 VASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDGRNKVTMNDLVEAINKI 375          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.799e-48
Identity = 88/176 (50.00%), Postives = 129/176 (73.30%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            +GSELVQKY+G+G+++VRE+F+MAR K   I+F DE+D+I   R ++  G D EVQRT+++++ ++DGFD R NI+++ ATNRPD LDPA+LRPGR DR V   +P +E+R +I KIH   M    DI F+ LA+     +GAD++++ TEAGMFA+R  ++ V  ++FL+AV KV
Sbjct:  225 VGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEFLEAVEKV 400          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.799e-48
Identity = 89/176 (50.57%), Postives = 129/176 (73.30%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            +GSELVQKY+G+G+++VRE+F+MAR K   I+F DE+D+I   R ++  G D EVQRT+++++ ++DGFD R NI+++ ATNRPD LDPA+LRPGR DR V   +P +E+R +I KIH   M    DI F+ LA++    +GAD++++ TEAGMFA+R  +  V  +DFL+AV KV
Sbjct:  225 VGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDFLEAVEKV 400          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.349e-48
Identity = 92/176 (52.27%), Postives = 124/176 (70.45%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            + SE  QK+VGEGAR+VRELF+MA+ K   I+F DE+DAIG  R D G  G+ E+QRT+++++ +LDGF+   N+K++ ATNR D LDPALLRPGR DR +E  LPD   RT+IF I+ + M  E +I  ELL++L    +GADI++VC EA   AIR  R  VT KD +DA+ K+
Sbjct:  200 VASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.349e-48
Identity = 92/176 (52.27%), Postives = 124/176 (70.45%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            + SE  QK+VGEGAR+VRELF+MA+ K   I+F DE+DAIG  R D G  G+ E+QRT+++++ +LDGF+   N+K++ ATNR D LDPALLRPGR DR +E  LPD   RT+IF I+ + M  E +I  ELL++L    +GADI++VC EA   AIR  R  VT KD +DA+ K+
Sbjct:  200 VASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of CB291036 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.349e-48
Identity = 92/176 (52.27%), Postives = 124/176 (70.45%), Query Frame = -2
Query:  313 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 840
            + SE  QK+VGEGAR+VRELF+MA+ K   I+F DE+DAIG  R D G  G+ E+QRT+++++ +LDGF+   N+K++ ATNR D LDPALLRPGR DR +E  LPD   RT+IF I+ + M  E +I  ELL++L    +GADI++VC EA   AIR  R  VT KD +DA+ K+
Sbjct:  200 VASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
The following BLAST results are available for this feature:
BLAST of CB291036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
PRS6A_SOLLC4.734e-4953.7126S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ4.734e-4953.7126S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS10_SCHPO6.182e-4950.57Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS10_YEAST8.075e-4951.3426S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PSMR_SULSO1.055e-4852.27Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_METMA1.799e-4850.00Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METAC1.799e-4850.57Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_SULIY2.349e-4852.27Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM2.349e-4852.27Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL2.349e-4852.27Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02ba10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ba10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291036 ID=CB291036; Name=CB291036; organism=Citrus sinensis; type=EST; length=841bp
TTTTTTTTTTTTTAGAAAGAAATATTCATAAAATAATTTAATTCCATGTT
CTAACAGAAATTGGAAAATCCACGTAATTATGAAATCATACAAAATGGTT
CTTGAGAGGGCAAATGTTACGCAAACACAGCAAGTTTAAACAACAGAGAA
TCAAATTGATGGGACAGCCTCTCAAAGGAACTTCATGATCTTGGATAACC
CTCTGAGAAGGTGGAACAATTGCGTCCAAGCATCTCTCCAGAAAGAAAAA
CATCGGAATCAATTGTAGACCATATATTTAGGCGTTGCACTGAACTTTTG
ATATCCCTTGATGACTTTGTTCACTGCATCGAGGAAGTCTTTCTCTGTCA
CTGTTTTTCTTCGTGCCCGGATGGCAAACATCCCAGCTTCTGTGCATACA
CTCCTTATATCAGCTCCGGTGGAATTGGGGCAAAGCCTAGCCAAGAGCTC
AAAGCGGATATCTCTTTCACAGTTCATTGTTCGCGTGTGGATCTTAAATA
TCTGTGTCCGGCTCTCCAAATCAGGAAGGCCAAACTCAACCTTACGATCT
AATCGTCCGGGACGCAACAGGGCCGGATCAAGTGTGTCAGGCCTGTTTGT
TGCCATTAGAACTTTGATATTTCCACGAGCATCAAACCCATCAAGCTGAT
TCACAATTTCAAGCATTGTGCGTTGAACCTCGTTGTCCCCGCCAACACCA
TCATCAAAACGTGCACCTCCTATAGCATCAACTTCATCAAAGAAGACAAT
ACAAGCCTTCTTTGAACGTGCCATCTGAAATAGTTCGCGAACCATACGAG
CTCCCTCACCAACATATTTCTGTACAAGCTCACTCCCAATC
back to top