CB291075

Overview
NameCB291075
Unique NameCB291075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.233e-32
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = -3
Query:  273 DGDEESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 770
            D      +R+ V++ VLE                    CTI+ LIAAL FHQ FEG  LGGCI QA++      +MA FFA+TTP GI++G A ++VY  NSP ALI  G+L++ SAG+L+YMALVDL+AA+F   ++  + ++Q    +   LG G MS++A WA
Sbjct:  174 DSSNAQLLRYRVIAMVLELGIIVHSVVIGLSLGATSDTCTIKGLIAALCFHQMFEGMGLGGCILQAEYTNMKKFVMAFFFAVTTPFGIALGIALSTVYQDNSPKALITVGLLNACSAGLLIYMALVDLLAAEFMGPKLQGSIKMQFKCLIAALLGCGGMSIIAKWA 339          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZIP8_ARATH (Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.202e-32
Identity = 74/159 (46.54%), Postives = 99/159 (62.26%), Query Frame = -3
Query:  273 VRHVVVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 749
            +R+ V++ VLE                    CTI+ LIAAL FHQ FEG  LGGCI QA++      +MA FFA+TTP GI++G A +SVY  NSP ALI  G+L++ SAG+L+YMALVDL+AA+F    +  + +LQ+  +    LG G MS+LA WA
Sbjct:  189 LRYRVIATVLELGIIVHSVVIGLSLGATNDTCTIKGLIAALCFHQMFEGMGLGGCILQAEYTNVKKFVMAFFFAVTTPSGIALGIALSSVYKDNSPTALITVGLLNACSAGLLIYMALVDLLAAEFMGSMLQRSVKLQLNCFGAALLGCGGMSVLAKWA 347          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: IRT2_ARATH (Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.358e-30
Identity = 70/164 (42.68%), Postives = 95/164 (57.93%), Query Frame = -3
Query:  273 DEESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 764
            D+   +R+ V++ VLE                    CTI+ LI AL FH  FEG  LGGCI QA F      LMA FF  TTP GI +G A +S+Y  NSP ALI  G+L++ SAG+L+YMALVDL+A +F    +  + +LQ+  +    LG  +MS++A+WA
Sbjct:  187 DDGQLLRYQVIAMVLEVGILFHSVVIGLSLGATNDSCTIKGLIIALCFHHLFEGIGLGGCILQADFTNVKKFLMAFFFTGTTPCGIFLGIALSSIYRDNSPTALITIGLLNACSAGMLIYMALVDLLATEFMGSMLQGSIKLQIKCFTAALLGCAVMSVVAVWA 350          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZRT2_YEAST (Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae GN=ZRT2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.125e-15
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = -3
Query:  273 LIAALSFHQFFEGFALGGCISQAQF---KTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRM---SCNFRLQVVFYLMLFLGAGLMSLLAIWA 641
            L   L+FHQ FEG  LG  +++  +   K     LM   F LT+P+ +++G      + P S  ALI  G+ DS+S+GIL+Y  LV+L+A +F            +  +  YL++  GA LM+LL  WA
Sbjct:  294 LFIVLTFHQMFEGLGLGTRVAETNWPESKKYMPWLMGLAFTLTSPIAVAVGIGVRHSWIPGSRRALIANGVFDSISSGILIYTGLVELMAHEFLYSNQFKGPDGLKKMLSAYLIMCCGAALMALLGKWA 422          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZRT1_YEAST (Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae GN=ZRT1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.040e-14
Identity = 46/127 (36.22%), Postives = 71/127 (55.91%), Query Frame = -3
Query:  273 LIAALSFHQFFEGFALGGCISQAQF---KTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADF-FSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 641
            L   L FHQ FEG  +G  +S  +F   K      +   + LTTP+ ++IG    + Y   S  AL++ G+LD++SAGIL+Y  LV+L+A DF F+ + + + R      +    GAG+M+L+  WA
Sbjct:  250 LYPVLVFHQSFEGLGIGARLSAIEFPRSKRWWPWALCVAYGLTTPICVAIGLGVRTRYVSGSYTALVISGVLDAISAGILLYTGLVELLARDFIFNPQRTKDLRELSFNVICTLFGAGIMALIGKWA 376          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZRT1_SCHPO (Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe GN=zrt1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.361e-13
Identity = 42/129 (32.56%), Postives = 71/129 (55.04%), Query Frame = -3
Query:  273 RPLIAALSFHQFFEGFALGGCISQAQFKTQSATL---MACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADF-FSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIWA 647
            + L   + FHQ FEG  LG  ++   +  ++A +   +   ++L TP+G++ G      ++P + G+   +G+LD++S+GILVY  LV+L+A DF FS     N+   +        G G+M+LL  WA
Sbjct:  280 KTLFPVIIFHQAFEGCGLGSRLAGMAWGPKTAWVPWVLGVIYSLVTPIGMAAGLGVREHWDPLAHGSYAAQGVLDAISSGILVYAGLVELLAHDFLFSPERERNWYKLIYLLACSMAGTGVMALLGKWA 408          
BLAST of CB291075 vs. ExPASy Swiss-Prot
Match: ZNTC_DICDI (Protein zntC OS=Dictyostelium discoideum GN=zntC PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.008e-11
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = -3
Query:  276 LIAALSFHQFFEGFALGGCISQAQFKTQSATLMACFFALTTPVGISIGTAAASVYNPNSPGALIVEGILDSMSAGILVYMALVDLIAADFFSKRMSCNFRLQVVFYLMLFLGAGLMSLLAIW 641
            L+ A+  H+F +G  LG  I  A F  + + +   F A  TP+GI IG A +S Y  +S  A +V+GI+ S++ G  +Y++L++L+ +    K      +L V      FLG  +M++LA+W
Sbjct:  286 LLIAVLAHKFLDGLVLGIAIKYAYFSFKFSCIALVFAAAMTPLGIGIGMAISSAYE-SSTDAYLVKGIILSITCGSFIYISLIELLPSGLCQKGWP-KLKLAVA-----FLGYSVMAILALW 400          
The following BLAST results are available for this feature:
BLAST of CB291075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
IRT1_ARATH3.233e-3243.37Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
ZIP8_ARATH7.202e-3246.54Probable zinc transporter 8 OS=Arabidopsis thalian... [more]
IRT2_ARATH1.358e-3042.68Fe(2+) transport protein 2 OS=Arabidopsis thaliana... [more]
ZRT2_YEAST6.125e-1535.66Zinc-regulated transporter 2 OS=Saccharomyces cere... [more]
ZRT1_YEAST3.040e-1436.22Zinc-regulated transporter 1 OS=Saccharomyces cere... [more]
ZRT1_SCHPO3.361e-1332.56Zinc-regulated transporter 1 OS=Schizosaccharomyce... [more]
ZNTC_DICDI7.008e-1133.61Protein zntC OS=Dictyostelium discoideum GN=zntC P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bc10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bc10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291075 ID=CB291075; Name=CB291075; organism=Citrus sinensis; type=EST; length=868bp
TTTTTTTTTTCCTAAAGAACTTTTTGACTTTATTAATTCGCTCATCAGCT
ACAATCTGTATTAAGAGAGTAAATTTTCATACCTAATGATACATTATCAC
AATCTAAGGATACAATTTCTTGCTTCTCTCCTTGCACCTATGCTTCCCCT
ACTAAAGCAATTTTATGAAAGAATTGAACAAATTTCTCTTCATGTTGCTC
TGAAAACAATAAAAAAAATTAAAGGTGGGGGAGGAGATAAATAACCAAAA
GACATAGTCTAATAGTTTGTCAAGCCCAAATTGCAAGCAAAGACATCAAT
CCAGCTCCAAGAAACAGCATCAAATAAAACACTACTTGAAGCCTAAAATT
GCAGCTCATCCTTTTACTGAAAAAATCTGCTGCAATTAGATCCACTAAAG
CCATGTACACCAAAATGCCGGCTGACATTGAATCTAAAATTCCTTCAACA
ATCAAAGCACCTGGGCTGTTTGGGTTGTAAACTGAAGCAGCTGCAGTACC
GATGCTGATCCCTACTGGAGTTGTTAAGGCGAAAAAACATGCCATTAACG
TGGCTGATTGGGTCTTGAATTGAGCTTGCGAGATGCAACCTCCAAGTGCA
AATCCTTCAAAGAATTGATGGAAGGATAACGCTGCTATCAAGGGTCTTAT
TGTACATGGACTGTGTGAAACTCCAAGCGATATCCCAATGATAATCGAGT
GTGAAACAATTCCAAGTTCCAAAACCTGGGAAACGACGACGTGCCGAACC
CCGCTTTCCTCATCCCCATCACTAAACCCGTGAGAATGCCCATGCCCGAG
CCCCTGCCCGTGTTCATGGCCAGCCTCCTTCACGTGCCCCTCACATGCGT
GTTGCCCATGAGGATGAT
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