CB291299
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_ECOL6 (GDP-mannose 4,6-dehydratase OS=Escherichia coli O6 GN=gmd PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27 Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = -2 Query: 190 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDH---------------------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAA 627 FV RKITRA+ I GL+S L+LGN + RDWG A DYV+ WMM QE P+D+V+AT + V +F+E+A +G+ + + +D RYF PAEV+ L GD TK + LGW P + ++V MV ++E K+ + GY A Sbjct: 196 FVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGYDVA 368
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_ECO57 (GDP-mannose 4,6-dehydratase OS=Escherichia coli O157:H7 GN=gmd PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27 Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = -2 Query: 190 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDH---------------------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAA 627 FV RKITRA+ I GL+S L+LGN + RDWG A DYV+ WMM QE P+D+V+AT + V +F+E+A +G+ + + +D RYF PAEV+ L GD TK + LGW P + ++V MV ++E K+ + GY A Sbjct: 196 FVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGYDVA 368
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMD1_CAEEL (GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis elegans GN=bre-1 PE=1 SV=3) HSP 1 Score: 118.242 bits (295), Expect = 3.387e-26 Identity = 63/149 (42.28%), Postives = 88/149 (59.06%), Query Frame = -2 Query: 229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW-----------KDHVV---IDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627 FV RKITR+V +I +G Q + LGN A RDWG A +YVEAMW + ++PDD+V+AT + V EF +AF +G L W KD V+ + +Y+ P EV+ L G++ K +K LGW +V +LVK MV +I L+K Sbjct: 246 FVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAMWRILQHDSPDDFVIATGKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKDGVIRVKVSPKYYRPTEVETLLGNAEKAKKTLGWEAKVTVPELVKEMVASDIILMK 394
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMD2_CAEEL (GDP-mannose 4,6 dehydratase 2 OS=Caenorhabditis elegans GN=gmd-2 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.545e-26 Identity = 61/151 (40.40%), Postives = 86/151 (56.95%), Query Frame = -2 Query: 223 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNWKD--------------HVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKRE 627 FV RKITR+V +I + Q + LGN A RDWG A +YVEAMW + Q+ PDD+V+AT + V EF +AF +G L W+ V + +Y+ P EV+ L G+ K RK LGW P++ +LVK MV +I L++ + Sbjct: 229 FVTRKITRSVAKISLRQQEHIELGNLSALRDWGHAKEYVEAMWRILQQDTPDDFVIATGKQFSVREFCNLAFAEIGEQLVWEGEGVDEVGKNQDGVVRVKVSPKYYRPTEVETLLGNPAKARKTLGWEPKITVPELVKEMVASDIALMEAD 379
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMD1_CAEBR (GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis briggsae GN=bre-1 PE=3 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 7.545e-26 Identity = 63/149 (42.28%), Postives = 86/149 (57.72%), Query Frame = -2 Query: 229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW-----------KDHVV---IDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627 FV RKITR+V +I +G Q + LGN A RDWG A +YVEAMW + + PDD+V+AT + V EF +AF +G L W KD +V + +Y+ P EV+ L G+ K +K LGW +V +LVK MV +I L+K Sbjct: 224 FVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAMWRILQHDAPDDFVIATGKQFSVREFCNLAFAEIGEVLEWEGEGVEEVGKNKDGIVRVKVSPKYYRPTEVETLLGNPEKAKKTLGWEAKVTVPELVKEMVASDIALMK 372
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: NOEL_RHIFR (GDP-mannose 4,6-dehydratase OS=Rhizobium fredii GN=noeL PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.745e-25 Identity = 65/150 (43.33%), Postives = 80/150 (53.33%), Query Frame = -2 Query: 229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW---------------KDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627 FV RKITRA I +G Q L+LGN A RDWG A +YV MWMM Q+ P DYV+AT + V F+E AF G + W K V +D RYF P EVD L GD+TK R+VLGW L MV E++ ++ Sbjct: 198 FVTRKITRAAAAISLGKQEVLYLGNLDAQRDWGHAREYVRGMWMMCQQDRPGDYVLATGVTTSVRTFVEWAFEETGMTIEWVGEGIEERGIDAATGKCVVAVDPRYFRPTEVDLLLGDATKARQVLGWRHETSVRDLACEMVREDLSYLR 347
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: NOEL_RHISN (GDP-mannose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=noeL PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.387e-25 Identity = 64/150 (42.67%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNWKDH---------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627 FV RKITRA I +G Q L+LGN A RDWG A +YV MWMM Q+ P DYV+AT + V F+E AF G + W V +D RYF P EVD L GD+TK R+VLGW L MV E++ ++ Sbjct: 198 FVTRKITRAAAAISLGKQEVLYLGNLDAQRDWGHAREYVRGMWMMCQQDRPGDYVLATGVTTSVRTFVEWAFEETGMTIEWVGEGIEERGIDAATGRCVVAVDPRYFRPTEVDLLLGDATKARQVLGWRHETSVRDLACEMVREDLSYLR 347
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D2_VIBCH (Probable GDP-mannose 4,6-dehydratase OS=Vibrio cholerae GN=rfbD PE=3 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 7.808e-23 Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = -2 Query: 226 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLE---------VAFGYVGLNWKDHVV------------------IDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKR 627 FV RKITR + I GL+ L++GN A RDWG A DYV WMM Q+ P+D+V+AT + V +F+E + F G++ K V ID RYF PAEV+ L GD +K ++ LGW P + ++ MV E++++ +R Sbjct: 196 FVTRKITRGLANIAQGLEKCLYMGNMDALRDWGHAKDYVRMQWMMLQQDQPEDFVIATGVQYSVRQFIEWSAKELGVTLTFEGQGVDEKGIVTAIEGDKAPALKVGDVVVQIDPRYFRPAEVETLLGDPSKAKQKLGWTPEITVQEMCAEMVMEDLKVAQR 356
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_YERE8 (Probable GDP-mannose 4,6-dehydratase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gmd PE=3 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 1.020e-22 Identity = 60/170 (35.29%), Postives = 90/170 (52.94%), Query Frame = -2 Query: 199 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEF---------LEVAFGYVGLN-----------------WKDHVV-IDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGY 627 FV RKITRA+ I +GL+ L+LGN + RDWG A DYV WMM Q+ P+D+V+AT + V EF +E+ F G++ D +V +D RYF PAEV+ L GD +K ++ LGW P + +++ MV +++ K+ + G+ Sbjct: 195 FVTRKITRAIANIALGLEDCLYLGNMDSLRDWGHAKDYVRMQWMMLQQDQPEDFVIATGKQITVREFVRMSAKEAGIEIEFSGKGIDEIATISAISDEYATSAKVGDIIVRVDPRYFRPAEVETLLGDPSKAKEKLGWVPEITVEEMCAEMVAGDLQQAKQHALLKANGF 364
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D1_VIBCH (Probable GDP-mannose 4,6-dehydratase OS=Vibrio cholerae GN=rfbD PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.020e-22 Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = -2 Query: 199 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWK------DH---------------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGY 627 FV RKITR + I GL+ LF+GN A RDWG A DYV+ WMM Q+ P D+V+AT + V EF++++ +G+ + D V +D YF PAEV+ L GD + +K LGW P + Q+V MV ++E + + GY Sbjct: 197 FVTRKITRGMANIAQGLEKCLFMGNLDALRDWGHAKDYVKMQWMMLQQDEPRDFVIATGVQYSVREFIDMSARELGIELEFVGKGVDEKAVVKSVIGTKAPAIKVGDIIVAVDPAYFRPAEVETLLGDPSLAKKELGWVPEITLQQMVSEMVASDLEQAQSHALLKKHGY 366 The following BLAST results are available for this feature:
BLAST of CB291299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CB291299 ID=CB291299; Name=CB291299; organism=Citrus sinensis; type=EST; length=628bpback to top |