CB291299

Overview
NameCB291299
Unique NameCB291299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_ECOL6 (GDP-mannose 4,6-dehydratase OS=Escherichia coli O6 GN=gmd PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27
Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = -2
Query:  190 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDH---------------------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAA 627
            FV RKITRA+  I  GL+S L+LGN  + RDWG A DYV+  WMM  QE P+D+V+AT   + V +F+E+A   +G+  +                             + +D RYF PAEV+ L GD TK  + LGW P +   ++V  MV  ++E  K+  +    GY  A
Sbjct:  196 FVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGYDVA 368          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_ECO57 (GDP-mannose 4,6-dehydratase OS=Escherichia coli O157:H7 GN=gmd PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27
Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = -2
Query:  190 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWKDH---------------------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGYMAA 627
            FV RKITRA+  I  GL+S L+LGN  + RDWG A DYV+  WMM  QE P+D+V+AT   + V +F+E+A   +G+  +                             + +D RYF PAEV+ L GD TK  + LGW P +   ++V  MV  ++E  K+  +    GY  A
Sbjct:  196 FVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGYDVA 368          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMD1_CAEEL (GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis elegans GN=bre-1 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 3.387e-26
Identity = 63/149 (42.28%), Postives = 88/149 (59.06%), Query Frame = -2
Query:  229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW-----------KDHVV---IDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627
            FV RKITR+V +I +G Q  + LGN  A RDWG A +YVEAMW +   ++PDD+V+AT +   V EF  +AF  +G  L W           KD V+   +  +Y+ P EV+ L G++ K +K LGW  +V   +LVK MV  +I L+K
Sbjct:  246 FVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAMWRILQHDSPDDFVIATGKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKDGVIRVKVSPKYYRPTEVETLLGNAEKAKKTLGWEAKVTVPELVKEMVASDIILMK 394          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMD2_CAEEL (GDP-mannose 4,6 dehydratase 2 OS=Caenorhabditis elegans GN=gmd-2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.545e-26
Identity = 61/151 (40.40%), Postives = 86/151 (56.95%), Query Frame = -2
Query:  223 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNWKD--------------HVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKRE 627
            FV RKITR+V +I +  Q  + LGN  A RDWG A +YVEAMW +  Q+ PDD+V+AT +   V EF  +AF  +G  L W+                V +  +Y+ P EV+ L G+  K RK LGW P++   +LVK MV  +I L++ +
Sbjct:  229 FVTRKITRSVAKISLRQQEHIELGNLSALRDWGHAKEYVEAMWRILQQDTPDDFVIATGKQFSVREFCNLAFAEIGEQLVWEGEGVDEVGKNQDGVVRVKVSPKYYRPTEVETLLGNPAKARKTLGWEPKITVPELVKEMVASDIALMEAD 379          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GMD1_CAEBR (GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis briggsae GN=bre-1 PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 7.545e-26
Identity = 63/149 (42.28%), Postives = 86/149 (57.72%), Query Frame = -2
Query:  229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW-----------KDHVV---IDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627
            FV RKITR+V +I +G Q  + LGN  A RDWG A +YVEAMW +   + PDD+V+AT +   V EF  +AF  +G  L W           KD +V   +  +Y+ P EV+ L G+  K +K LGW  +V   +LVK MV  +I L+K
Sbjct:  224 FVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAMWRILQHDAPDDFVIATGKQFSVREFCNLAFAEIGEVLEWEGEGVEEVGKNKDGIVRVKVSPKYYRPTEVETLLGNPEKAKKTLGWEAKVTVPELVKEMVASDIALMK 372          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: NOEL_RHIFR (GDP-mannose 4,6-dehydratase OS=Rhizobium fredii GN=noeL PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.745e-25
Identity = 65/150 (43.33%), Postives = 80/150 (53.33%), Query Frame = -2
Query:  229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNW---------------KDHVVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627
            FV RKITRA   I +G Q  L+LGN  A RDWG A +YV  MWMM  Q+ P DYV+AT  +  V  F+E AF   G  + W               K  V +D RYF P EVD L GD+TK R+VLGW        L   MV E++  ++
Sbjct:  198 FVTRKITRAAAAISLGKQEVLYLGNLDAQRDWGHAREYVRGMWMMCQQDRPGDYVLATGVTTSVRTFVEWAFEETGMTIEWVGEGIEERGIDAATGKCVVAVDPRYFRPTEVDLLLGDATKARQVLGWRHETSVRDLACEMVREDLSYLR 347          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: NOEL_RHISN (GDP-mannose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=noeL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.387e-25
Identity = 64/150 (42.67%), Postives = 79/150 (52.67%), Query Frame = -2
Query:  229 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVG--LNWKDH---------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVK 627
            FV RKITRA   I +G Q  L+LGN  A RDWG A +YV  MWMM  Q+ P DYV+AT  +  V  F+E AF   G  + W                  V +D RYF P EVD L GD+TK R+VLGW        L   MV E++  ++
Sbjct:  198 FVTRKITRAAAAISLGKQEVLYLGNLDAQRDWGHAREYVRGMWMMCQQDRPGDYVLATGVTTSVRTFVEWAFEETGMTIEWVGEGIEERGIDAATGRCVVAVDPRYFRPTEVDLLLGDATKARQVLGWRHETSVRDLACEMVREDLSYLR 347          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D2_VIBCH (Probable GDP-mannose 4,6-dehydratase OS=Vibrio cholerae GN=rfbD PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.808e-23
Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = -2
Query:  226 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLE---------VAFGYVGLNWKDHVV------------------IDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKR 627
            FV RKITR +  I  GL+  L++GN  A RDWG A DYV   WMM  Q+ P+D+V+AT   + V +F+E         + F   G++ K  V                   ID RYF PAEV+ L GD +K ++ LGW P +   ++   MV E++++ +R
Sbjct:  196 FVTRKITRGLANIAQGLEKCLYMGNMDALRDWGHAKDYVRMQWMMLQQDQPEDFVIATGVQYSVRQFIEWSAKELGVTLTFEGQGVDEKGIVTAIEGDKAPALKVGDVVVQIDPRYFRPAEVETLLGDPSKAKQKLGWTPEITVQEMCAEMVMEDLKVAQR 356          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D_YERE8 (Probable GDP-mannose 4,6-dehydratase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gmd PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.020e-22
Identity = 60/170 (35.29%), Postives = 90/170 (52.94%), Query Frame = -2
Query:  199 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEF---------LEVAFGYVGLN-----------------WKDHVV-IDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGY 627
            FV RKITRA+  I +GL+  L+LGN  + RDWG A DYV   WMM  Q+ P+D+V+AT +   V EF         +E+ F   G++                   D +V +D RYF PAEV+ L GD +K ++ LGW P +  +++   MV  +++  K+  +    G+
Sbjct:  195 FVTRKITRAIANIALGLEDCLYLGNMDSLRDWGHAKDYVRMQWMMLQQDQPEDFVIATGKQITVREFVRMSAKEAGIEIEFSGKGIDEIATISAISDEYATSAKVGDIIVRVDPRYFRPAEVETLLGDPSKAKEKLGWVPEITVEEMCAEMVAGDLQQAKQHALLKANGF 364          
BLAST of CB291299 vs. ExPASy Swiss-Prot
Match: GM4D1_VIBCH (Probable GDP-mannose 4,6-dehydratase OS=Vibrio cholerae GN=rfbD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.020e-22
Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = -2
Query:  199 FVPRKITRAVGRIKIGLQSKLFLGNFQASRDWGFAGDYVEAMWMMFPQENPDDYVVATEESHPVEEFLEVAFGYVGLNWK------DH---------------------VVIDKRYFSPAEVDNLKGDSTKPRKVLGWNPRVGFDQLVKMMVDENIELVKREKVFVDVGY 627
            FV RKITR +  I  GL+  LF+GN  A RDWG A DYV+  WMM  Q+ P D+V+AT   + V EF++++   +G+  +      D                      V +D  YF PAEV+ L GD +  +K LGW P +   Q+V  MV  ++E  +   +    GY
Sbjct:  197 FVTRKITRGMANIAQGLEKCLFMGNLDALRDWGHAKDYVKMQWMMLQQDEPRDFVIATGVQYSVREFIDMSARELGIELEFVGKGVDEKAVVKSVIGTKAPAIKVGDIIVAVDPAYFRPAEVETLLGDPSLAKKELGWVPEITLQQMVSEMVASDLEQAQSHALLKKHGY 366          
The following BLAST results are available for this feature:
BLAST of CB291299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GM4D_ECOL62.345e-2736.99GDP-mannose 4,6-dehydratase OS=Escherichia coli O6... [more]
GM4D_ECO572.345e-2736.99GDP-mannose 4,6-dehydratase OS=Escherichia coli O1... [more]
GMD1_CAEEL3.387e-2642.28GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis el... [more]
GMD2_CAEEL7.545e-2640.40GDP-mannose 4,6 dehydratase 2 OS=Caenorhabditis el... [more]
GMD1_CAEBR7.545e-2642.28GDP-mannose 4,6 dehydratase 1 OS=Caenorhabditis br... [more]
NOEL_RHIFR3.745e-2543.33GDP-mannose 4,6-dehydratase OS=Rhizobium fredii GN... [more]
NOEL_RHISN6.387e-2542.67GDP-mannose 4,6-dehydratase OS=Rhizobium sp. (stra... [more]
GM4D2_VIBCH7.808e-2336.65Probable GDP-mannose 4,6-dehydratase OS=Vibrio cho... [more]
GM4D_YERE81.020e-2235.29Probable GDP-mannose 4,6-dehydratase OS=Yersinia e... [more]
GM4D1_VIBCH1.020e-2235.29Probable GDP-mannose 4,6-dehydratase OS=Vibrio cho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02cg03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cg03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291299 ID=CB291299; Name=CB291299; organism=Citrus sinensis; type=EST; length=628bp
TTTTGGGAAAAACCAATTTCATCTTCCTGGAATTAACGAATGGAGTTTCC
AAGATTCAAACCACTTAAAACCTGAAATAACCCTTGAACTAAATAAATAT
TCTCCCCAAAAATCAAACCCTAAAAAGCACTCCAGCATTAACTTAAAAAT
AATACAAAAAGGGGAAAACCAAATCTAAGGGTGCTGGTGAGCGGCCATGT
ATCCAACATCAACAAAAACTTTCTCTCTTTTAACCAATTCAATATTTTCA
TCAACCATCATCTTCACCAACTGGTCAAAACCAACTCGAGGGTTCCAGCC
AAGCACTTTCCTGGGCTTGGTTGAATCCCCCTTCAAATTATCAACCTCAG
CTGGGCTAAAATACCTCTTATCGATCACCACATGATCCTTCCAATTCAAC
CCCACATACCCAAACGCGACCTCCAAAAACTCCTCCACTGGATGGGACTC
CTCCGTTGCCACCACGTAATCATCCGGGTTCTCCTGGGGGAACATCATCC
ACATTGCCTCCACGTAGTCTCCCGCAAATCCCCAATCCCTCGACGCTTGG
AAATTACCCAAAAACAATTTACTCTGCAATCCTATCTTGATCCTCCCAAC
CGCACGCGTAATTTTTCTAGGAACAAAA
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