CB291302

Overview
NameCB291302
Unique NameCB291302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL14_AERPE (50S ribosomal protein L14P OS=Aeropyrum pernix GN=rpl14p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.075e-32
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = -2
Query:  293 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 658
            GL V + V  ADN+GAK + IISV  +K RL RLPSA VGD+V+ +VKKG P +R++V+ AV+VRQR+P+RR DG ++ FEDNA VIVNP G  +GS + GPI +E A+ WPR+A  A  IV
Sbjct:   19 GLQVGSYVPVADNSGAKEVMIISVPQVKTRLRRLPSAGVGDLVVVSVKKGTPQMRRQVVYAVVVRQRRPFRRPDGTWVSFEDNAVVIVNPDGTPRGSEVRGPIAREAAERWPRVAKIATMIV 140          
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL14_METJA (50S ribosomal protein L14P OS=Methanocaldococcus jannaschii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32
Identity = 70/121 (57.85%), Postives = 85/121 (70.25%), Query Frame = -2
Query:  293 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 655
            LPV A   CADNTGAK + II+V+  KG   RLP+A VGDMV+ TVKKG P++RK+V+PAV++RQRK  RR DG  + F DNA VIV P G  KGS I GP+ KE A+ WP IA  A  I+
Sbjct:   12 LPVGARCICADNTGAKEVEIIAVRNYKGVARRLPTARVGDMVIVTVKKGTPEMRKQVLPAVVIRQRKEIRRPDGTRVKFADNAVVIVTPDGNPKGSDIKGPVAKEAAERWPGIARIAKIII 132          
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL14_METVS (50S ribosomal protein L14P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.675e-31
Identity = 64/120 (53.33%), Postives = 85/120 (70.83%), Query Frame = -2
Query:  296 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 655
            LP  A + CADNTGAK L +I+VK   G + RLPSA VG +V  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL14_METVA (50S ribosomal protein L14P OS=Methanococcus vannielii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.675e-31
Identity = 64/120 (53.33%), Postives = 85/120 (70.83%), Query Frame = -2
Query:  296 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 655
            LP  A + CADNTGAK L +I+VK   G + RLPSA VG +V  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL14_METMP (50S ribosomal protein L14P OS=Methanococcus maripaludis GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.138e-30
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  296 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 655
            LP  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K +RR DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYRRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL14_METM7 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  296 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 655
            LP  A + CADNTGAK L II+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEIIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL14_META3 (50S ribosomal protein L14P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.487e-30
Identity = 65/120 (54.17%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  296 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 655
            LP  A + CADNTGAK L II+VKG KG   RLP+  VG +V  +VKKG P++RK+V+PA+I+RQ+K +RR DG  + FEDNA VIV P+G  KGS I GP+ KE A+ W  ++  A  I
Sbjct:   12 LPNGARLICADNTGAKELEIIAVKGYKGVARRLPAGGVGSLVFVSVKKGTPEMRKQVLPAIIIRQKKEYRRPDGSRVKFEDNAAVIVTPEGSPKGSEIKGPVAKEAAERWAGVSRLAKII 131          
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL14_METM6 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.942e-30
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  296 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 655
            LP  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVSRLAKII 131          
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL14_METS5 (50S ribosomal protein L14P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 63/115 (54.78%), Postives = 84/115 (73.04%), Query Frame = -2
Query:  293 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 637
            VN +DN+GAK   IISV G +G L R+P A VGD+VM +V+KG PD+RK+   AV++RQR P+RR DG ++ F+DNA VIVNP G  KG+ I GP+ +E A+ WP++AS A  IV
Sbjct:   24 VNVSDNSGAKEAMIISVFGYRGALRRVPYANVGDLVMVSVRKGAPDVRKQKFKAVVIRQRMPFRRPDGTWISFDDNAVVIVNPDGTAKGTEIRGPVAREAAERWPKVASLATLIV 138          
BLAST of CB291302 vs. ExPASy Swiss-Prot
Match: RL14_METM5 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  296 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 655
            LP  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVSRLAKII 131          
The following BLAST results are available for this feature:
BLAST of CB291302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410
Match NameE-valueIdentityDescription
RL14_AERPE2.075e-3256.5650S ribosomal protein L14P OS=Aeropyrum pernix GN=... [more]
RL14_METJA3.539e-3257.8550S ribosomal protein L14P OS=Methanocaldococcus j... [more]
RL14_METVS6.675e-3153.3350S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METVA6.675e-3153.3350S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METMP1.138e-3053.3350S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_METM71.487e-3053.3350S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_META31.487e-3054.1750S ribosomal protein L14P OS=Methanococcus aeolic... [more]
RL14_METM61.942e-3052.5050S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_METS52.536e-3054.7850S ribosomal protein L14P OS=Metallosphaera sedul... [more]
RL14_METM52.536e-3052.5050S ribosomal protein L14P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02cg05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291302 ID=CB291302; Name=CB291302; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTAACCACCAATAGTAACCTATTTATAAAAACCTTTAA
AAAACTTTAGAACAAAATCAATATTCTCTTAAACCTTAAAATTCTTGGAA
ATTAAACACAAATTAAATTCTTCTACAATTAGAATAGGTAGAAAATCTGA
AATCTCCTTGTATCTGTCTAGCAATAGCCAATAGAGGAACAACCACAACA
CTCATCAGTAGGAAATGATCCCAATGATATTAACAGACCCTACGGTCACC
TACCAAACTAAGGCCAAAAAAATCCCTTAAAACCCCCACTCAGACAATAG
CATTGGCAGCACTTGCAATTCTTGGCCACAGATCAGCACACTCCTTACCA
ATTGGTCCAGTTATGGCAGATCCTTTCATTTCGCCCTTAGGGTTGACGAT
GACACCAGCATTATCTTCAAAGTACATGAAGACGCCGTCCTTTCGGCGCC
AGGGCTTGCGCTGGCGGACGATGACAGCTGGCATGACCTTTTTCCTCAGA
TCGGGCTTTCCTTTCTTGACAGTGGCCATGACCATGTCGCCGACGCAGGC
CGACGGAAGTCGGTTGAGTCTCCCTTTGATTCCTTTCACCGATATTATGT
AGAGATTCTTCGCACCCGTGTTGTCGGCACAGTTCACCGTCGCCGCCACC
GGCAGACCCAGCCTCGTG
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