CB291314

Overview
NameCB291314
Unique NameCB291314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.510e-50
Identity = 98/187 (52.41%), Postives = 131/187 (70.05%), Query Frame = -2
Query:  278 IFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 838
            +FTK DL           V A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD +E+ L  +F  GV  V ++ L   YPT+A+ PH  IN YK V+A+++ T+Y+FP A+ VK +LADPS F
Sbjct:   89 VFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDKTEETLHSRFLEGVRNVASVCLQTGYPTVASVPHSIINGYKRVLALSVETDYTFPLAENVKAFLADPSAF 275          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.303e-50
Identity = 94/187 (50.27%), Postives = 130/187 (69.52%), Query Frame = -2
Query:  278 IFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 838
            +FT  DL           + APAR   +AP+DV VP GNTG++P +TSFFQ L IPTKI +GT+EI + V L+ K  KVG SEA LL  L I PF+YG+ V ++Y+ G+V+SPE+LD+SE+DL+    S  S++TA++L  +YPT+ +  H  +NAYKN+VAV+LATEY+F   ++ K +LADPS F
Sbjct:   87 VFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF 273          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.899e-46
Identity = 85/187 (45.45%), Postives = 130/187 (69.52%), Query Frame = -2
Query:  278 IFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 838
            +FT GDL           V APAR G VAP+DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +   VLD+SE+ L++ F+S ++ + A++LA+++PTL +  H  +N+YK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:   87 VFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSSVLDISEEQLLKAFSSAITTIAAVSLALNFPTLPSVIHSLVNSYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.425e-45
Identity = 84/187 (44.92%), Postives = 130/187 (69.52%), Query Frame = -2
Query:  278 IFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 838
            +FT GDL           V APAR G +AP DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +  +VLD+SE+ L++ F++ ++ + +L+LA+++PTL +  H  +NAYK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:   87 VFTNGDLKEVRDKILANKVAAPARAGAIAPADVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSDVLDISEEQLLKAFSTAITTIASLSLALNFPTLPSVIHSVVNAYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.021e-43
Identity = 91/208 (43.75%), Postives = 128/208 (61.54%), Query Frame = -2
Query:  155 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSWFD 778
            APA+ G+ AP DV +P G TG+DP  T FFQ L I TKI KG +EI   V+LIR+G++V +S A LL KL ++PF+YGL V+ VY+NGSVYS  VLD++++ ++E FA+G + V A++ A+  P+ AAAPH  + A++N  A+ L T + FPQ  ++KE + +P+ F                             E DGDMGFS FD
Sbjct:  108 APAKQGVTAPTDVFIPAGPTGMDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYGLKVEHVYDNGSVYSASVLDITDEQILEAFAAGAANVAAVSRAVGLPSAAAAPHSILEAFRNCAALCLDTPFCFPQMQRLKEMVENPAAF-AAAAAPAAAAPAAAPAAAAKAPEPEEEEEEDGDMGFSLFD 314          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.516e-42
Identity = 83/183 (45.36%), Postives = 123/183 (67.21%), Query Frame = -2
Query:  293 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLA 841
            +IF K ++           VGAPA+ G+ AP DV++P G TG++P+QTSF Q L I TKIN+G ++I+  V +I+ G KVG+SEA LL KL I+PF+YGL  + +Y+ G+ YSP +   SE+DL+ KF  G+  + A++L I YPT+A+ PH  +NA+KN++A++  T Y+F  A+K K   A
Sbjct:   87 IIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSI---SEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAA 266          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.291e-42
Identity = 91/228 (39.91%), Postives = 133/228 (58.33%), Query Frame = -2
Query:  155 IFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSWFD 838
            +FT   L           V APAR G VAP D+ V   NTG++P +TSFFQ L +PTKI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++GL V  VY+NG V+   +LD+++++LV  F S VS + +++LAI YPTL +  H  IN YK+++AVA+A  Y +P+ + + + + +P K+                             ESD DMGF  FD
Sbjct:   87 VFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKY--AAAAPAATSAASGDAAPAEEAAAEEEEESDDDMGFGLFD 312          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.381e-40
Identity = 87/207 (42.03%), Postives = 129/207 (62.32%), Query Frame = -2
Query:  155 PARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSWFD 775
            PAR+G++APIDV +PPG TG+DPS TSF + L I TKI KG +EI   V LI++G+KV +S A LL K  + P SYG+ V++VY++G +Y  +VLD++++D++EKF+ GVS V AL+ A    T A+ PH+F+ A+KN+VA+ + ++Y+FP    +K+++ +P  F                             E DG MGF  FD
Sbjct:  111 PARLGVIAPIDVFIPPGPTGMDPSHTSFLESLGISTKIVKGQIEIQEHVHLIKQGEKVTASSATLLRKFNMNP-SYGVDVRTVYDDGVIYDAKVLDITDEDILEKFSKGVSNVAALSRATGVITEASYPHVFVEAFKNIVALIIDSDYTFPLMKILKKWVENPEAFAAVAAPASAAKADEPKKEEAKKVEEEEEEEEDGFMGFGMFD 316          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.429e-37
Identity = 84/177 (47.46%), Postives = 116/177 (65.54%), Query Frame = -2
Query:  314 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKF-ASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQAD 841
            LIFT  ++           V APARVG +AP DV+VP GNTG++P  TSFFQ LNI TKI KGTVEI++  +++  GD+V +S A LL KL I PF Y + VQSV++ G ++  E L ++ DD+VEK+   G+S V AL+L    PT A  PHM ++A+K ++  ++ATEY F + D
Sbjct:   95 LIFTNEEIPVITAVLDKHRVQAPARVGAIAPCDVIVPAGNTGMEPKATSFFQALNIATKIAKGTVEIVSDKKVLSVGDRVDNSTATLLQKLDISPFYYQVEVQSVWDRGMLFLREDLSIT-DDVVEKYLLEGISNVAALSLGAGIPTAATLPHMIMDAFKTLLGASVATEYEFDEFD 270          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.756e-33
Identity = 79/174 (45.40%), Postives = 111/174 (63.79%), Query Frame = -2
Query:  320 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 841
            LIFT   +           V APARVG + P DVVVP G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +    G+S V A+AL    PT +    M ++A+KN++AV++AT Y F +
Sbjct:   95 LIFTNNAVQEITSVLDGHRVKAPARVGAI-PCDVVVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 267          
The following BLAST results are available for this feature:
BLAST of CB291314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RLA0L_HUMAN2.510e-5052.4160S acidic ribosomal protein P0-like OS=Homo sapie... [more]
RLA0_SCHPO7.303e-5050.2760S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_PODAN4.899e-4645.4560S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_NEUCR1.425e-4544.9260S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_EIMTE1.021e-4343.7560S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_DICDI2.516e-4245.3660S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_YEAST4.291e-4239.9160S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_PLAF81.381e-4042.0360S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_TRYCR1.429e-3747.4660S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_LEICH4.756e-3345.4060S acidic ribosomal protein P0 OS=Leishmania chag... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02cg11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cg11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291314 ID=CB291314; Name=CB291314; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTTGTCCTAAATAAAGGATTATATAAAATACCAATG
AAACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCCCACAAAACCAAAA
ACATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCA
CTTAGTCGAACCAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAGGG
TCTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACC
GCCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGT
ACTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCA
ACAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCTGC
CAGGGTTGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACAC
CTGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCT
GGGCTGTAAACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATA
AGAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATC
CCACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACA
GTACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAGGT
CTGGGAGGGGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTG
GAGCAACCAAACCAACACGAGCAGGAGCTCCAACCTTGTACTTAGCAACC
TCCTCTTTCACTTCCTTCAAATCACCCTTTGTGAAAATCAAC
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