CB291314

Overview
NameCB291314
Unique NameCB291314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.258e-32
Identity = 75/174 (43.10%), Postives = 109/174 (62.64%), Query Frame = -2
Query:  320 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 841
            LIFT   +           V   ARVG ++P DV+V  G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +    G+S V A+AL    PT +    M ++A+KN++AV++AT Y F +
Sbjct:   95 LIFTNNAVQEITSVLDAHRVKRAARVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 268          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.857e-28
Identity = 65/177 (36.72%), Postives = 101/177 (57.06%), Query Frame = -2
Query:  308 IFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKV 838
            +F KG+              A A+VG VA  DV V    TG+ P +TS+FQ L I TKI KG VEII+P +++ +GDKVG S+A LL  L I+PF Y + +  +YE+G +Y   ++D+ E+D+     + +S V A +L     T A+ P+   NA+K+++ V+L  ++   +   V
Sbjct:  111 VFFKGNARDIKKAIDENVREACAKVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFKDILHVSLGADFMIKEQSMV 287          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = -2
Query:  332 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 778
            APA+ G V P DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++           LA+ I+YPT      +   A+ N   VA+   Y
Sbjct:  110 APAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGY 259          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.257e-17
Identity = 53/150 (35.33%), Postives = 78/150 (52.00%), Query Frame = -2
Query:  332 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 778
            APA+ G V P DVV+P G T L P       Q + IP +I +G V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++           LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:  110 APAKPGAVVPKDVVIPAGPTPLAPGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMVQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.257e-17
Identity = 54/163 (33.13%), Postives = 85/163 (52.15%), Query Frame = -2
Query:  293 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLA 778
            AP R G +AP D+ V  G+TG+ P       + + IP  I KG + I     +++KG+ V    AA+L +LGI+P   GL + +VYE+G +Y+P+VL + E+ L+    +       LA   +YP     P +   A+ N  A AL+ E +F   +   + LA
Sbjct:  114 APVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADIQAAYQNAFNLAFNTAYPAKEVLPFLIQKAFIN--ARALSVETAFVTKETAGDILA 274          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.778e-17
Identity = 49/146 (33.56%), Postives = 77/146 (52.74%), Query Frame = -2
Query:  344 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 778
            AP + G  AP D+ +  G+TG+ P    S  + + +P  I KG + I     + ++GD V +  A +L+KL I+P   GL V  VYE+G VY PE+L + ED+ + K  S  +    L++    PT A    +   A+ N  AV++
Sbjct:  115 APIKAGATAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVYDPEILKIDEDEFLAKLQSAYTGAFNLSVNAVIPTSATIETIVQKAFSNAKAVSI 260          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.150e-17
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = -2
Query:  332 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 778
            APA+ G   P DVV+P G T L P       Q + IP +I +G V I     +++ G+++    A +L  LGI+P   GL + +VYE+G +Y+P+VL + E + +            LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:  110 APAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.064e-16
Identity = 51/150 (34.00%), Postives = 73/150 (48.67%), Query Frame = -2
Query:  332 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 778
            APA+ G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY+P+VL + E + +            L++ I+YPT      +   AY     VA+   Y
Sbjct:  109 APAKAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPDVLAIDESEYINMLQKAYMHAFNLSVNIAYPTKQTIEAILQKAYLGAKNVAVEAGY 258          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.816e-16
Identity = 50/154 (32.47%), Postives = 75/154 (48.70%), Query Frame = -2
Query:  320 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 778
            APA+ G+  P DVV+P G T + P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY+PEVL + E++ +            L++  +YPT      +   AY     VA+   Y  P+
Sbjct:  109 APAKPGVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPEVLAIDEEEYINLLQQAYMHAFNLSVNTAYPTSQTIEAIIQKAYLGAKNVAVEAGYITPE 262          
BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 51/150 (34.00%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  332 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 778
            APA+ G  AP DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L +LGI P   GL + + YE+G VY+PEVL + E+  +            L++ ++YPT      +   A+     VA+   Y
Sbjct:  109 APAKAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANILNQLGIEPLEVGLKLLAAYEHGIVYTPEVLAIDEEQYISMLQQAYMHAFNLSVNVAYPTKQTIEAIIQKAFLGAKNVAVEAGY 258          
The following BLAST results are available for this feature:
BLAST of CB291314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RLA0_LEIIN5.258e-3243.1060S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_ENCCU7.857e-2836.7260S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_PYRHO4.321e-1836.67Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRAB1.257e-1735.33Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METJA1.257e-1733.13Acidic ribosomal protein P0 homolog OS=Methanocald... [more]
RLA0_METVO4.778e-1733.56Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_PYRFU8.150e-1733.33Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRKO1.064e-1634.00Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_THEON1.816e-1632.47Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_THESM2.371e-1634.00Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02cg11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cg11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291314 ID=CB291314; Name=CB291314; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTTGTCCTAAATAAAGGATTATATAAAATACCAATG
AAACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCCCACAAAACCAAAA
ACATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCA
CTTAGTCGAACCAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAGGG
TCTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACC
GCCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGT
ACTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCA
ACAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCTGC
CAGGGTTGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACAC
CTGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCT
GGGCTGTAAACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATA
AGAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATC
CCACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACA
GTACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAGGT
CTGGGAGGGGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTG
GAGCAACCAAACCAACACGAGCAGGAGCTCCAACCTTGTACTTAGCAACC
TCCTCTTTCACTTCCTTCAAATCACCCTTTGTGAAAATCAAC
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