CB291314

Overview
NameCB291314
Unique NameCB291314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB291314 vs. ExPASy Swiss-Prot
Match: RLA0_METBU (Acidic ribosomal protein P0 homolog OS=Methanococcoides burtonii (strain DSM 6242) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.044e-12
Identity = 43/147 (29.25%), Postives = 69/147 (46.94%), Query Frame = -2 
Query:  404 LIFTKGDLXXXXXXXXXXXVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPT 841
            LIFTK +              +P + G+VA  D++V  G T   P       Q   IP  I+ G V I     + + G+ V    AA+L +L I P   GL +++V E GS+++P+VL + E+ +   F         +++  +YPT
Sbjct:   89 LIFTKQNPFKLYKLLEKSKTPSPIKAGMVATSDIIVEKGPTSFPPGPILGDMQGAGIPAAIDGGKVVIKETKAVAKAGEVVSQKLAAMLTRLEIYPLEVGLDLRAVLEEGSIFTPDVLAIDEEQIFSNFVQAAQQAFNMSVNAAYPT 235
The following BLAST results are available for this feature:
BLAST of CB291314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RLA0_METBU6.044e-1229.25Acidic ribosomal protein P0 homolog OS=Methanococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02cg11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cg11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291314 ID=CB291314; Name=CB291314; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTTGTCCTAAATAAAGGATTATATAAAATACCAATG
AAACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCCCACAAAACCAAAA
ACATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCA
CTTAGTCGAACCAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAGGG
TCTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACC
GCCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGT
ACTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCA
ACAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCTGC
CAGGGTTGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACAC
CTGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCT
GGGCTGTAAACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATA
AGAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATC
CCACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACA
GTACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAGGT
CTGGGAGGGGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTG
GAGCAACCAAACCAACACGAGCAGGAGCTCCAACCTTGTACTTAGCAACC
TCCTCTTTCACTTCCTTCAAATCACCCTTTGTGAAAATCAAC
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