CB291322

Overview
NameCB291322
Unique NameCB291322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_METJA (50S ribosomal protein L11P OS=Methanocaldococcus jannaschii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.153e-21
Identity = 59/150 (39.33%), Postives = 90/150 (60.00%), Query Frame = -1
Query:  310 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 750
            V V VTGG   A   L P IGPLG++  ++ ++I ++T KD++G++V VK+ V     K  +   +P   AL+ K L       +    +   GN+TL+ VI+IAK+ +   ++  L   VKE+LGTC S+G TV+GKDPK++Q+EI  G
Sbjct:    6 VEVLVTGGRATAGPPLGPAIGPLGVNVMQVVKEINEKT-KDYEGMQVPVKVIVDTETRKFEIEVGIPPTTALIKKELGIETAAHEPRHEVV--GNLTLEQVIKIAKMKKDAMLSYTLKNAVKEVLGTCGSMGVTVEGKDPKEVQKEIDAG 152          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_THEAC (50S ribosomal protein L11P OS=Thermoplasma acidophilum GN=rpl11p PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.342e-21
Identity = 56/155 (36.13%), Postives = 92/155 (59.35%), Query Frame = -1
Query:  298 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEI 750
            V   V GG+      + P +GPLGL+  ++ ++I ++T K+++G+RV V +TV + + K       +P  +AL+ K L   +   K+ + I   GN TLD ++++AK      +A DL     E+LGTCVS+G  VDGKDPK++Q++I  G++ I
Sbjct:    5 VKTMVEGGKATTGPPIGPALGPLGLNVAQVVKEINEKT-KEFQGMRVPVTITVVDPETKKYEITVGIPPTSALLKKKLGIEKGAAKRKEAIA--GNATLDQIVDVAKTKMASMLASDLKAATLEVLGTCVSMGINVDGKDPKEVQRQIKAGEISI 156          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_PYRKO (50S ribosomal protein L11P OS=Pyrococcus kodakaraensis GN=rpl11p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.718e-20
Identity = 59/158 (37.34%), Postives = 98/158 (62.03%), Query Frame = -1
Query:  310 SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 765
            +QVV+V V   GG+      L P IGPLGL+ K++ ++I K T K+++G++V VK+ V++ + K       +P  + L+ K L  P    K +    H   GN+T++ VI+IAK+   + +A +L    KE++GT +S+G TV+GKDP+++Q+EI +G
Sbjct:    2 AQVVEVLVE--GGKASPGPPLGPAIGPLGLNVKQVVDEINKAT-KEFEGMQVPVKIIVEDPKKKTFRIEVGIPPTSQLIKKELGIP----KGSSEAGHTPAGNLTMEQVIKIAKMKIDQMLAPNLKAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_PYRAB (50S ribosomal protein L11P OS=Pyrococcus abyssi GN=rpl11p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.909e-20
Identity = 62/156 (39.74%), Postives = 96/156 (61.54%), Query Frame = -1
Query:  310 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 762
            QVV+V V   GG+      L P IGPLGL+ K++ + I  E  K++ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IAK+ R + +A  L    KE++GT +S+G TV+GKDP+++Q+EI +G
Sbjct:    4 QVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_THEGJ (50S ribosomal protein L11P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.349e-19
Identity = 57/155 (36.77%), Postives = 96/155 (61.94%), Query Frame = -1
Query:  310 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 762
            QVV+V V   GG+      L P IGPLGL+ K++ ++I K T K+++G++V VK+ V++ + K       +P  + L+ K L  P+   +   +    GN+T++ VI+IAK+   + +A  L    KE++GT +S+G TV+GKDP+++Q+EI +G
Sbjct:    3 QVVEVLVE--GGKASPGPPLGPAIGPLGLNVKQVVDEINKAT-KEFEGMQVPVKIIVEDPKKKTFRIEVGIPPTSQLIKKELGIPKGSSEPVHSPV--GNLTMEQVIKIAKMKIDQMLAPTLKAASKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_PYRHO (50S ribosomal protein L11P OS=Pyrococcus horikoshii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.301e-19
Identity = 62/156 (39.74%), Postives = 95/156 (60.90%), Query Frame = -1
Query:  310 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 762
            QVV+V V   GG+      L P IGPLGL+ K++ + I  E  K++ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IAK+ R + +A  L    KE++GT +S+G TV+GKDP+ +Q+EI +G
Sbjct:    4 QVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKRSQMLALTLKAAAKEVIGTALSMGVTVEGKDPRIVQREIDEG 152          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_METVS (50S ribosomal protein L11P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.126e-19
Identity = 56/157 (35.67%), Postives = 93/157 (59.24%), Query Frame = -1
Query:  301 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 762
            QVV++ V  TGG+  A   L P IGPLG++  ++ + I  +T KD++G+ V VK+ V+  +    V   +P A+AL+ K L      ++    +   GNIT++ +++IAK+ +   +A  L    KE++GTCVSVG  V+GK PK+ Q+ +  G+ +
Sbjct:    4 QVVEILV--TGGKATAGPPLGPAIGPLGVNIMQVVQMINTKT-KDYEGMSVPVKVIVETTKRTFEVEVGIPPASALIKKELGLESGSQEPKHKVA--GNITMEKIVKIAKMKQDAMLAYTLKSAAKEVIGTCVSVGVNVEGKTPKEAQKAVDAGEFD 155          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_METKA (50S ribosomal protein L11P OS=Methanopyrus kandleri GN=rpl11p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.695e-19
Identity = 54/150 (36.00%), Postives = 96/150 (64.00%), Query Frame = -1
Query:  310 DVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV--QNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 753
            +V V + GG+      L P +GPLG++ +++ E+I ++T KD+KG+ V VK+ V  + R+ +V V     + +IK+    ++   + ++ +  G+++++ VI+IAK+     ++ DL    KEILGTC S+G TV+GKDPK++Q+EI +G
Sbjct:    5 EVEVLIEGGKADPGPPLGPALGPLGVNIQEVVEEINRKT-KDFKGMEVPVKIIVDTETREFEVKVGSPPTSAIIKSELGIDKGAHEPRH-ETVGDLSMEQVIKIAKMKFDDLLSYDLKTAAKEILGTCGSMGVTVEGKDPKEVQKEIDEG 152          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_THEVO (50S ribosomal protein L11P OS=Thermoplasma volcanium GN=rpl11p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.492e-18
Identity = 55/155 (35.48%), Postives = 91/155 (58.71%), Query Frame = -1
Query:  298 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEI 750
            V   V GG+      + P +GPLGL+  ++ ++I ++T K+++G++V V +TV + + K       VP  +AL+ K L   +   KK + +   GN TL+ +  +A    P  +AKDL   V E+LGTCV++G  V+GKDPK++Q+ I  G ++I
Sbjct:    5 VKTMVEGGKATTGPPIGPALGPLGLNVAQVVKEINEKT-KEFQGMQVPVTVTVIDPETKKYEITVGVPPTSALLKKELGLEKGASKKKEAVA--GNATLEQIKNVAIKKMPSMLAKDLKSAVLEVLGTCVAMGINVEGKDPKEVQKLIKSGQIKI 156          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_HYPBU (50S ribosomal protein L11P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.492e-18
Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = -1
Query:  310 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV---PSAAALVIKAL--KEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 750
            + V+V GGE   A  LAP I  LGL   K+ EDI K T K +KG  V VKL V     +  +    P+   L++KA+   EP  D    K     G++  + ++EIA + +P   AK L   VK ILG+  S+G TVDGKDPK + +E+ +G
Sbjct:    6 INVKVRGGEAKPAPPLAPAIEKLGLDVNKVVEDINKATEK-YKGFEVAVKLIVDENTKEYEIEVKPPTTTELLLKAVGASEPSGDPMHQKI----GDLPFEKIVEIAILKKPSLNAKTLKAAVKTILGSARSIGITVDGKDPKQVTKEVEEG 152          
The following BLAST results are available for this feature:
BLAST of CB291322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL11_METJA7.153e-2139.3350S ribosomal protein L11P OS=Methanocaldococcus j... [more]
RL11_THEAC9.342e-2136.1350S ribosomal protein L11P OS=Thermoplasma acidoph... [more]
RL11_PYRKO2.718e-2037.3450S ribosomal protein L11P OS=Pyrococcus kodakarae... [more]
RL11_PYRAB7.909e-2039.7450S ribosomal protein L11P OS=Pyrococcus abyssi GN... [more]
RL11_THEGJ1.349e-1936.7750S ribosomal protein L11P OS=Thermococcus gammato... [more]
RL11_PYRHO2.301e-1939.7450S ribosomal protein L11P OS=Pyrococcus horikoshi... [more]
RL11_METVS5.126e-1935.6750S ribosomal protein L11P OS=Methanococcus vannie... [more]
RL11_METKA6.695e-1936.0050S ribosomal protein L11P OS=Methanopyrus kandler... [more]
RL11_THEVO1.492e-1835.4850S ribosomal protein L11P OS=Thermoplasma volcani... [more]
RL11_HYPBU1.492e-1839.4750S ribosomal protein L11P OS=Hyperthermus butylic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ch03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ch03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291322 ID=CB291322; Name=CB291322; organism=Citrus sinensis; type=EST; length=837bp
TTTTTTTTTTTTTTTTAATAAACAAGATTCATTTGCATTAGAAACCTTAA
ATTTCAAAGATCCAATATACGTTTTCTGAAGCATCATTCAACATAAGTCC
ACTAAATTAAACCTTACATCTCCTAAATTCCAATAATAAAGCACTCGTTT
AAAGCTCGAATAATTGGAGACATCATCAAAATCCTTGTAAAGATCCAAAA
CTGATAATAAAAAAAAAGGCACTGATATATAGAAATAAAAAACAAAAATT
AAAATCTAAAATAGACCCCCTCACAAACAGAGTCTTCAATCAAGAGGAAT
TTCGACATCACCATCAGTGATCTCCTGCTGCAGGTCCTTAGGGTCCTTGC
CATCGACCGTACACCCAACAGAAACGCATGTGCCCAAAATCTCCTTAACG
GTGCCACTCAAATCCTTAGCCATCGACCTGGGCCGCATCACTTTTGCGAT
TTCGATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTGATGTTCTTGG
TCTTCTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAATGACCAGGGCG
GCGGCGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCTGGACGGTGAG
CTTGACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTTTCCTTGGCGA
TGTCCTCTCCGATTTTCTTGGGGGAGAGACCGAGGGGACCGATCTTTGGG
GCGAGGGAACTGGCGGCTCCCACCTCGCCACCGGTCACGCGGACGTACAC
GTCCACCACTTGGCTCGGGTCGAACTTCGGCGGCATGATTGCTCTGCTGG
TTACGGCTACAAAGAGTGTGTGAAGTGCTTTTTGCCC
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