CB291322

Overview
NameCB291322
Unique NameCB291322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_METM5 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 55/157 (35.03%), Postives = 89/157 (56.69%), Query Frame = -1
Query:  301 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 762
            QVV++ V  +GG+  A   L P IGPLG++  ++ + I  +  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IAK+ +   +A +L    KE++GTCVSVG  V+G  PK+ Q+ I  G  +
Sbjct:    4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKI-NDMTKDYDGMSVPVKVIVDTDKRTFEVEVGIPPASALVKKELGIATGAQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAIDAGQFD 155          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_KORCO (50S ribosomal protein L11P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.823e-16
Identity = 49/150 (32.67%), Postives = 86/150 (57.33%), Query Frame = -1
Query:  310 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 750
            V V + GG+      L P +G LGL+  +I ++I ++T+  + G+RV V++ V     K  +    P  + L+++ LK  +     +K I   GN+ ++ V+ IAK+    S   +L   VK++LGT +S+G TV+GKDP+++Q+E+  G
Sbjct:    6 VRVLIEGGKATPGPPLGPALGGLGLNMGQIVKEINEKTSS-YSGMRVPVEIEVDTETKKFEIRVGTPPTSMLILRELKAEKGSSDASKKI---GNLKMETVVNIAKMKLASSNTPELKQVVKQVLGTALSMGVTVEGKDPREVQREVDSG 151          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_METLZ (50S ribosomal protein L11P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = -1
Query:  307 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV--PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGD 750
            V V V GG   A   L P +GPLG++ K + +DI K+TA ++ G+ V V + V +++     V  P   ALV+K  +        T N +  GN+ L+ VI IAK+     ++ DL    KE++GTCVSVG TV+GK  K     +  G+
Sbjct:    5 VEVLVPGGRATAGPPLGPALGPLGINVKAVVDDINKKTA-EFNGMSVPVTVMVDDKKNVTLTVGIPPTTALVMK--EAGVEKGSGTPNTQAVGNLPLEAVIRIAKMKMESMLSYDLKTAAKEVMGTCVSVGVTVEGKTAKQAIAAVNAGE 151          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_SULIM (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = -1
Query:  310 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 750
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K   + EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDPK+L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGVSEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_NITMS (50S ribosomal protein L11P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = -1
Query:  310 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 738
            VTGG   A   L P +GPLG++  ++   I  +T KD++G++V V + V +   K  +   +PSAAAL++K  +   +        +  G++T+D V+++A      S A  L    K I+GTC+++G  V+GK PK++  EI +G
Sbjct:   10 VTGGGASAGPPLGPALGPLGVNIMEVINAINDKT-KDFEGMKVPVTVIVDSDTKKYEIEIGIPSAAALIMK--EAGIQKGSGASGTEWAGDVTMDAVVKVANTKLENSYASSLKSVAKTIVGTCLALGVKVEGKTPKEITAEINEG 152          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_META3 (50S ribosomal protein L11P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 54/158 (34.18%), Postives = 93/158 (58.86%), Query Frame = -1
Query:  301 SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 765
            ++VVDV V  TGG+  A   L P +GPLG++   + ++I ++T KD+ G+ V VK+ V   +R  ++ V +P  +AL IK     ++   + K I   GN++++  ++IAK+ +   ++  L    KE++GTCVS G  V+G  P+D Q+ I  G+ +
Sbjct:    3 TEVVDVLV--TGGKATAGPPLGPAVGPLGINIMNVVKEINEKT-KDYAGMSVPVKVIVNTDDRSFEIEVGIPPTSAL-IKTELGLDKGSTEPKAIVA-GNLSMEQAVKIAKMKKDSMLSFTLKNATKEVIGTCVSTGINVEGMSPRDAQKAIDAGEFD 155          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_SULIY (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.182e-15
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = -1
Query:  310 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 750
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDPK+L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_SULIL (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.182e-15
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = -1
Query:  310 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 750
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDPK+L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_SULIK (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.182e-15
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = -1
Query:  310 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 750
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDPK+L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of CB291322 vs. ExPASy Swiss-Prot
Match: RL11_SULIA (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.182e-15
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = -1
Query:  310 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 750
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDPK+L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
The following BLAST results are available for this feature:
BLAST of CB291322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL11_METM56.267e-1735.0350S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_KORCO1.823e-1632.6750S ribosomal protein L11P OS=Korarchaeum cryptofi... [more]
RL11_METLZ2.381e-1636.6750S ribosomal protein L11P OS=Methanocorpusculum l... [more]
RL11_SULIM6.928e-1635.0650S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_NITMS6.928e-1633.5650S ribosomal protein L11P OS=Nitrosopumilus marit... [more]
RL11_META36.928e-1634.1850S ribosomal protein L11P OS=Methanococcus aeolic... [more]
RL11_SULIY1.182e-1535.0650S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_SULIL1.182e-1535.0650S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_SULIK1.182e-1535.0650S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_SULIA1.182e-1535.0650S ribosomal protein L11P OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ch03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ch03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291322 ID=CB291322; Name=CB291322; organism=Citrus sinensis; type=EST; length=837bp
TTTTTTTTTTTTTTTTAATAAACAAGATTCATTTGCATTAGAAACCTTAA
ATTTCAAAGATCCAATATACGTTTTCTGAAGCATCATTCAACATAAGTCC
ACTAAATTAAACCTTACATCTCCTAAATTCCAATAATAAAGCACTCGTTT
AAAGCTCGAATAATTGGAGACATCATCAAAATCCTTGTAAAGATCCAAAA
CTGATAATAAAAAAAAAGGCACTGATATATAGAAATAAAAAACAAAAATT
AAAATCTAAAATAGACCCCCTCACAAACAGAGTCTTCAATCAAGAGGAAT
TTCGACATCACCATCAGTGATCTCCTGCTGCAGGTCCTTAGGGTCCTTGC
CATCGACCGTACACCCAACAGAAACGCATGTGCCCAAAATCTCCTTAACG
GTGCCACTCAAATCCTTAGCCATCGACCTGGGCCGCATCACTTTTGCGAT
TTCGATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTGATGTTCTTGG
TCTTCTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAATGACCAGGGCG
GCGGCGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCTGGACGGTGAG
CTTGACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTTTCCTTGGCGA
TGTCCTCTCCGATTTTCTTGGGGGAGAGACCGAGGGGACCGATCTTTGGG
GCGAGGGAACTGGCGGCTCCCACCTCGCCACCGGTCACGCGGACGTACAC
GTCCACCACTTGGCTCGGGTCGAACTTCGGCGGCATGATTGCTCTGCTGG
TTACGGCTACAAAGAGTGTGTGAAGTGCTTTTTGCCC
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